Locus 7587

Sequence ID 2L_DroMel_CAF1
Location 20,988,553 – 20,988,662
Length 109
Max. P 0.905278
window12198 window12199

overview

Window 8

Location 20,988,553 – 20,988,662
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 94.80
Mean single sequence MFE -20.80
Consensus MFE -20.31
Energy contribution -19.87
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.97
Structure conservation index 0.98
SVM decision value 1.04
SVM RNA-class probability 0.905278
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20988553 109 + 22407834
UUAUACAUAGUGGUGUUGCUAUAUUAACCAAACUUCUUCCUGAAGUAUGUAUACAGCACUCCCAUUCUUGUAAAUUGUUAAUUAUGUAUUGAACUACUUAUUUAAUUUG
...((((.(((((.(.((((.(((....((.(((((.....))))).)).))).))))..))))))..))))....(((((.((.(((......))).)).)))))... ( -19.30)
>DroSec_CAF1 37470 109 + 1
UUGUACAUAGUGGUGCUGCUAUAUUAACAAAACUUCUUCCUGAAGUACGUAUACAGCACUCCCAUACUUGUAAAUUUUUUAUUAUGUAUUGAACUACUUAUUUAAUUUG
..((((((((((((((((.(((((.......(((((.....)))))..)))))))))))...((....)).........)))))))))).................... ( -20.90)
>DroSim_CAF1 37881 109 + 1
UUGUACAUAGUGGUGCUGCUAUAUUAACGAAACUUCUUCCUGAAGUACGUAUACAGCACUCCCAUACUUGUACAUUUUUUAUUAUGUAUUGAACUACUUAUUUAAUUUG
.((((((.((((((((((.(((....(((..(((((.....))))).))))))))))))).....)))))))))................................... ( -22.20)
>consensus
UUGUACAUAGUGGUGCUGCUAUAUUAACAAAACUUCUUCCUGAAGUACGUAUACAGCACUCCCAUACUUGUAAAUUUUUUAUUAUGUAUUGAACUACUUAUUUAAUUUG
..((((((((((((((((.(((((.......(((((.....)))))..))))))))))))..((....))..........))))))))).................... (-20.31 = -19.87 +  -0.44)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 9

Location 20,988,553 – 20,988,662
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 94.80
Mean single sequence MFE -22.93
Consensus MFE -19.37
Energy contribution -19.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 0.84
SVM decision value 0.63
SVM RNA-class probability 0.805060
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20988553 109 - 22407834
CAAAUUAAAUAAGUAGUUCAAUACAUAAUUAACAAUUUACAAGAAUGGGAGUGCUGUAUACAUACUUCAGGAAGAAGUUUGGUUAAUAUAGCAACACCACUAUGUAUAA
....................(((((((.......((((....))))((...((((((((.((.(((((.....))))).))....))))))))...))..))))))).. ( -22.20)
>DroSec_CAF1 37470 109 - 1
CAAAUUAAAUAAGUAGUUCAAUACAUAAUAAAAAAUUUACAAGUAUGGGAGUGCUGUAUACGUACUUCAGGAAGAAGUUUUGUUAAUAUAGCAGCACCACUAUGUACAA
............(((......)))...................(((((..(((((((..(((.(((((.....)))))..))).......)))))))..)))))..... ( -20.50)
>DroSim_CAF1 37881 109 - 1
CAAAUUAAAUAAGUAGUUCAAUACAUAAUAAAAAAUGUACAAGUAUGGGAGUGCUGUAUACGUACUUCAGGAAGAAGUUUCGUUAAUAUAGCAGCACCACUAUGUACAA
............(((......)))...........(((((((((..((...(((((((((((.(((((.....)))))..)))..))))))))...))))).)))))). ( -26.10)
>consensus
CAAAUUAAAUAAGUAGUUCAAUACAUAAUAAAAAAUUUACAAGUAUGGGAGUGCUGUAUACGUACUUCAGGAAGAAGUUUCGUUAAUAUAGCAGCACCACUAUGUACAA
............(((......))).............((((((..(((...((((((((((..(((((.....)))))...))..))))))))...))))).))))... (-19.37 = -19.37 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:32 2006