Locus 7586

Sequence ID 2L_DroMel_CAF1
Location 20,986,287 – 20,986,382
Length 95
Max. P 0.988556
window12197

overview

Window 7

Location 20,986,287 – 20,986,382
Length 95
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 77.21
Mean single sequence MFE -24.07
Consensus MFE -21.22
Energy contribution -20.57
Covariance contribution -0.65
Combinations/Pair 1.18
Mean z-score -1.67
Structure conservation index 0.88
SVM decision value 2.13
SVM RNA-class probability 0.988556
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20986287 95 - 22407834
UAUUUGUACUAACUUUUAGAGAAUAAGAAGCUCUCGUUUUUCAGUUUGUUUAAGUAGAAUAGCUAGAUCGAAUUUGGGGAGGAGAAUAGUAUAAU----------------------
...((((((((.(((((........))))).((((.((((..((((((.((.(((......))).)).))))))..)))).)))).)))))))).---------------------- ( -20.70)
>DroSec_CAF1 35208 117 - 1
UAUUUGUACUAAGUUUUGGAAAAUUAGAAGCUCCCGCUAUUCAGCUAGUUCGAGUAGAAUGGCUAGAUCAAAUUUAGGGAGAAGAGUAGUAUAAUAAUAUAAAACAGAUUCUUGAGC
...(((((((((((((....))))).....((((((((((((.(((......))).)))))))(((((...)))))))))).....))))))))....................... ( -24.70)
>DroSim_CAF1 35605 117 - 1
UAUUUGUACUAAGUUUUAGAAAAUAAGAAGCUCCCGCUAUUCAGCUAGUUCGAGUAGAAUGGCUAGAUAGAAUUUAGGGAGAAGAAUAGUAUAAUCAUAUAAAACAGAUUCUUGCGC
...((((((((..(((((.....)))))..(((((.((((..(((((.(((.....))))))))..))))......))))).....))))))))....................... ( -26.80)
>consensus
UAUUUGUACUAAGUUUUAGAAAAUAAGAAGCUCCCGCUAUUCAGCUAGUUCGAGUAGAAUGGCUAGAUCGAAUUUAGGGAGAAGAAUAGUAUAAU_AUAUAAAACAGAUUCUUG_GC
...((((((((..(((((.....)))))..((((((((((((.(((......))).)))))))(((((...)))))))))).....))))))))....................... (-21.22 = -20.57 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:30 2006