Locus 7583

Sequence ID 2L_DroMel_CAF1
Location 20,977,638 – 20,977,734
Length 96
Max. P 0.610074
window12192

overview

Window 2

Location 20,977,638 – 20,977,734
Length 96
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.93
Mean single sequence MFE -17.06
Consensus MFE -10.25
Energy contribution -11.42
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -2.43
Structure conservation index 0.60
SVM decision value 0.16
SVM RNA-class probability 0.610074
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20977638 96 + 22407834
ACAAUUGUUGCAAAAGGGCAGCCAUAAAGUGGCCUUAUACAAACACA-----AUCCCACCUAUAAGUCCACUCC--CUC----GUGUCUUUUUCCUUUACACCCACA
.....(((.(.(((((((((.......(((((.((((((........-----........)))))).)))))..--...----.))))))))).)...)))...... ( -17.41)
>DroSec_CAF1 26410 96 + 1
ACAAUUGUUGCGAAAGGGCAGCCAUAAAGUGGCCUUAUACAAACACA-----AUCCCACCUAUAAGUCCACUCC--CUC----AUGUCUUUUUCCUUUACACCCACA
.....(((.(.(((((((((.......(((((.((((((........-----........)))))).)))))..--...----.))))))))).)...)))...... ( -18.91)
>DroSim_CAF1 26786 96 + 1
ACAAUUGUUGCGAAAGGGCAGCCAUAAAGUGGCCUUAUACAAACACA-----AUCCCACCUAUAAGUCCACUCC--CUC----AUGUCUUUUUCCUUUACACCCACA
.....(((.(.(((((((((.......(((((.((((((........-----........)))))).)))))..--...----.))))))))).)...)))...... ( -18.91)
>DroEre_CAF1 32945 95 + 1
ACAAUUGUUGCAAAGGGGCAGCCAUAAAGUGGCCUUAUACAAACACA-----AUCCCACCUAUAAGUCCACUCC--CUC----CUGUCUUUUUUCUCU-CACCCACA
.....((..(.((((((((((......(((((.((((((........-----........)))))).)))))..--...----)))))))))).)...-))...... ( -18.89)
>DroYak_CAF1 36897 100 + 1
ACAAUUGUUGCAAAAGGGCAGCCAUAAAGUGGCCCUAUACAAACACA-----AUCCCACCUAUAAGUGCACUCC--CUCCCUUCUGUGUUUUUUCUUUACACCCACA
.........(((.(((((..(((((...)))))..............-----....(((......)))......--..))))).))).................... ( -14.40)
>DroAna_CAF1 59559 95 + 1
ACAAUUGUUGCAGAAGGGCAGCCAUAAAGUGGCCUUAUACAAACACCCCUAGACUUCCCCCACCAAUCCACCUACACAC----AUGAGCUCU--------GCCAGCU
......((((((((((((..(((((...))))).............))))........................((...----.))...)))--------).)))). ( -13.86)
>consensus
ACAAUUGUUGCAAAAGGGCAGCCAUAAAGUGGCCUUAUACAAACACA_____AUCCCACCUAUAAGUCCACUCC__CUC____AUGUCUUUUUCCUUUACACCCACA
......(((((......))))).....(((((.((((((.....................)))))).)))))................................... (-10.25 = -11.42 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:26 2006