| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,975,715 – 20,975,806 |
| Length | 91 |
| Max. P | 0.878000 |
| Location | 20,975,715 – 20,975,806 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.65 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -14.85 |
| Energy contribution | -14.68 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.878000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20975715 91 - 22407834 -----------------C---UGCUGCA---AAUAAACAUCGAUUGAAUGCAACAUUUGAUUGGCAAUAAUUGAAAAUAGUUGUUGCACAUUAAGAGAUGGAUGGAUAUGGAAG------ -----------------.---.......---.(((..(((((((..((((...))))..))).((((((((((....)))))))))).((((....))))))))..))).....------ ( -19.10) >DroGri_CAF1 45349 111 - 1 CCACCCCUCUGUUUUCCUGCGUGGUGCA---UGUAAACAUCAAUUGAAUGCAACAUUUGAUUGGCAAUAAUUGAAAAUAGUUGUUGUACAUUAAGAGUUGCUGGGGUGGGGUGC------ (((((((..(((((.(.(((.....)))---.).)))))..........(((((.((((((..((((((((((....))))))))))..)))))).))))).))))))).....------ ( -37.40) >DroSim_CAF1 24924 91 - 1 -----------------C---UGCUGCA---AAUAAACAUCGAUUGAAUGCAACAUUUGAUUGGCAAUAAUUGAAAAUAGUUGUUGCACAUUAAGAGGUGGAUGGAUAUGGAGG------ -----------------.---..((.((---.((...(((((((..((((...))))..))).((((((((((....)))))))))).((((....)))))))).)).)).)).------ ( -20.70) >DroEre_CAF1 31090 83 - 1 -----------------C---UGCUGCG---AGUAAACAUCGAUUGAAUGCAACAUAUGAUUGGCAAUAAUUGAAAAUAGUUGUUGCACGUUAAGAGGUGGAUGGA-------------- -----------------.---.......---......((((..((((.(((((((....(((..((.....))..)))...)))))))..))))..))))......-------------- ( -16.70) >DroYak_CAF1 34973 91 - 1 -----------------C---UGCUGCA---AGUAAACAUCGAUUGAAUGCAACAUAUGAUUGGCAAUAAUUGAAAAUAGUUGUUGCACGUUAAGAGGUGGAUGGAUAUGGAGG------ -----------------.---..((.((---.((...((((..((((.(((((((....(((..((.....))..)))...)))))))..))))..)))).....)).)).)).------ ( -19.50) >DroPer_CAF1 69650 102 - 1 -----------------UGAAUGCCACAUGUUGUAAACAUCAAUUGAAUGCAACAUUUGAUUGGCAAUAAUUGAAAAUAGUUGUUGUACAUUAAGAGGUGCAGGGG-GGGGCGGGUGUUU -----------------....((((...(.(((((.....((((..((((...))))..))))((((((((((....))))))))))...........))))).).-..))))....... ( -24.10) >consensus _________________C___UGCUGCA___AGUAAACAUCGAUUGAAUGCAACAUUUGAUUGGCAAUAAUUGAAAAUAGUUGUUGCACAUUAAGAGGUGGAUGGAUAUGGAGG______ .....................................((((..((((.(((((((....(((..((.....))..)))...)))))))..))))..)))).................... (-14.85 = -14.68 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:24 2006