Locus 7580

Sequence ID 2L_DroMel_CAF1
Location 20,973,494 – 20,973,589
Length 95
Max. P 0.739463
window12189

overview

Window 9

Location 20,973,494 – 20,973,589
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 86.27
Mean single sequence MFE -20.12
Consensus MFE -15.84
Energy contribution -17.68
Covariance contribution 1.84
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.79
SVM decision value 0.45
SVM RNA-class probability 0.739463
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20973494 95 + 22407834
UCAGCAAUUUACAGGGAUAUUCCAUGAAUAUUUCAAUCAAUUGGGUUUCCCCCGGUGUCUCAUUUCAUCU-UCUUGUACUUUGCAUUUGCAAAUCG
...((((..(((((..((((((...))))))..).....((((((.....))))))..............-...))))..))))............ ( -20.70)
>DroSec_CAF1 22304 95 + 1
UCAGCAAUUUACAGGGAUAUUCCAUGAAUAUUUCAAUCAAUUGGGUUUCCCCCGGUUUCUCAUUUCAUUU-UCUUGUAGUUUGCAUUUGGAUGUCG
...((((.((((((..((((((...))))))..)....(((((((.....))))))).............-...))))).))))............ ( -21.30)
>DroSim_CAF1 22675 95 + 1
UCAGCAAUUUACAGGGAUAUUCCAUGAAUAUUUCAAUCAAUUGGGUUUCCCCCGGUUUCUCAUUUCAUCC-UCUUGUAGUUUGCAUUUGCAUGUCG
...((((.((((((..((((((...))))))..)....(((((((.....))))))).............-...))))).))))............ ( -21.30)
>DroEre_CAF1 29109 86 + 1
UCAGCCAUUUACAGGGAUAUUCCAUGAAUAUUUCAAUCAAUUGGGUUUCG-CCCGCUUCCCAUUUCAGCU-GCUUGUAGUGUGCAUUU--------
...((((((.((((..((((((...))))))..)........(((.....-)))(((.........))).-...))))))).))....-------- ( -18.30)
>DroYak_CAF1 32851 96 + 1
UCAGCAAUUUGCAGGGAUAUUCCAUGAAUAUUUCAAUCAAUUGGGGUUCCCCCUGUUUCUCAUUUCCCCUUUCUAGUUGCUUGCAUUUGAACGUCG
..(((((((...((((((((((...))))))...........((((...)))).............))))....)))))))............... ( -19.00)
>consensus
UCAGCAAUUUACAGGGAUAUUCCAUGAAUAUUUCAAUCAAUUGGGUUUCCCCCGGUUUCUCAUUUCAUCU_UCUUGUAGUUUGCAUUUGCAUGUCG
...((((.((((((..((((((...))))))..)....(((((((.....))))))).................))))).))))............ (-15.84 = -17.68 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:23 2006