Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,172,359 – 2,172,456 |
Length | 97 |
Max. P | 0.617367 |
Location | 2,172,359 – 2,172,456 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 85.78 |
Mean single sequence MFE | -37.76 |
Consensus MFE | -28.65 |
Energy contribution | -29.09 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.76 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2172359 97 + 22407834 UGAGUUUUCAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAA------------------UGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC--C ...((((...(((((((..(((.((((((((.(....(((...------------------((((....)))))))....).))))))))...)))..))))))).....))))--. ( -36.40) >DroSec_CAF1 18411 115 + 1 UGAGUUUUGAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAAUGGGAGUGGGAAUGAGAAUGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGCUCCGAAC--C ...((((.(((((((((..(((.((((((((.(....(((....((((((....((....))...))))))..)))....).))))))))...)))..)))))))..)).))))--. ( -41.00) >DroSim_CAF1 12792 115 + 1 UGAGUUUUGAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAAUGGGAGUGGGAAUGAGGAUGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC--C .....((((((((((((..((((..(.....)(((((..(.....(.(((.((..((((((......)))))))).))).).)..)))))..))))..)))))))...))))).--. ( -39.80) >DroEre_CAF1 16190 97 + 1 UGAGUCUUGAAGUAGGCAAUCCGGAGGACGACGGGAUUGGGAA------------------UGCGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC--C ......(((((((((((..(((.((((((..((....))..((------------------(((((((.......)))))))))))))))...)))..)))))))...))))..--. ( -35.50) >DroYak_CAF1 16871 99 + 1 UGAGUCUUGAAGUAGGCAAUCCGGAGGAUGACGAGAAUGAGAA------------------UGCGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAACACC ...((.(((((((((((..((((..(.....)((((((...((------------------(((((((.......)))))))))))))))..))))..)))))))...))))))... ( -36.10) >consensus UGAGUUUUGAAGUAGGCAAUCCGGAGGACGACGAGAAUGGGAA__________________UGAGGCUCCUCACCAGCUGCAUUGUUCUCAGUGGAGGGCCUGCUGUUUCGAAC__C ..........(((((((..(((.((((((((.(....(((.....................((((....)))))))....).))))))))...)))..)))))))............ (-28.65 = -29.09 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:55 2006