Locus 7578

Sequence ID 2L_DroMel_CAF1
Location 20,960,788 – 20,960,893
Length 105
Max. P 0.996717
window12186

overview

Window 6

Location 20,960,788 – 20,960,893
Length 105
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 75.80
Mean single sequence MFE -25.30
Consensus MFE -8.70
Energy contribution -11.70
Covariance contribution 3.00
Combinations/Pair 1.00
Mean z-score -2.71
Structure conservation index 0.34
SVM decision value 2.74
SVM RNA-class probability 0.996717
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20960788 105 + 22407834
UUCCCCUUUCAACACCAGUGUCUCAUCUC-----CACCCCUUCCAGCCCCCCGCACUCGAAUGGGCUCUGUGCCCCAAAAUAUUCCUUAGUUA-AGGGGCAAUAUUCAAAU
..((((((..(((.(.(((((........-----..................))))).)...((((.....))))..............))))-)))))............ ( -19.17)
>DroSec_CAF1 14421 107 + 1
UGCCCCAUUCGACACCAGUGUCUCAUCCCAGUCUCACCCCUUCGGU----ACGCCCUCAAAUGGGCUCUGUGCCCCAAAAUAUUCCUUAGUUAAAGGGGCAAUAUUCAAAU
((((((....((((....)))).....................(((----((((((......))))...))))).....................)))))).......... ( -30.60)
>DroSim_CAF1 14481 107 + 1
UGCCCCAUUCGACACCAGUGUCUCAUCCCAGUCUCACCCCUUCGGU----ACGCCCUCAAAUGGGCUCUGUGCCCCAAAAUAUUCCUUAGUUAAAGGGGCAAUAUUCAAAU
((((((....((((....)))).....................(((----((((((......))))...))))).....................)))))).......... ( -30.60)
>DroEre_CAF1 22099 97 + 1
-GCCCCCUUUGACACCAGCAUCUCCUCUC-----CCCCCCUUCGCU----GCGCCUCAGAGUGGGCUAUGUGCCCC-GAAAAUUCCUUAGUUG-GGG--CAAUAUUCAAAU
-((((.((((((..(((((..........-----.........)))----).)..)))))).))))....((((((-((..(.....)..)))-)))--)).......... ( -31.61)
>DroYak_CAF1 24709 94 + 1
------AAUUGACACCAGCAACUCAUCUC-----UUCCCUUUUGGU----GCGCCCCAGAACGAGCUCUGUGCCCA-ACAUAUUCCUUAGUUA-GGGACCAAUAUUCAAAU
------..((((.................-----.......((((.----((((...(((......))))))))))-)....(((((.....)-)))).......)))).. ( -14.50)
>consensus
UGCCCCAUUCGACACCAGUGUCUCAUCUC_____CACCCCUUCGGU____ACGCCCUCGAAUGGGCUCUGUGCCCCAAAAUAUUCCUUAGUUA_AGGGGCAAUAUUCAAAU
.(((((....((((....))))........................................((((.....))))....................)))))........... ( -8.70 = -11.70 +   3.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:20 2006