| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,952,756 – 20,952,849 |
| Length | 93 |
| Max. P | 0.615255 |
| Location | 20,952,756 – 20,952,849 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.07 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -16.69 |
| Energy contribution | -15.75 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20952756 93 + 22407834 AACACUAGACCGGAGUCAAUCUUUUUGGCCCGGUC-----CGU-----CCCC-----GGCCUAUCAAGAUGCAGUCAGAAAGUGCAUAAAAGACGUAUCUCACGGCAA--- .......((((((.(((((.....)))))))))))-----...-----....-----.(((.....((((((.(((...............)))))))))...)))..--- ( -27.86) >DroPse_CAF1 53415 103 + 1 AACACUCUGCUGGAGUCAAUCUUUUUGGCCUGGCCCCGUCCGUGCCGGGCCG-----GGCCUAUCUAGAUGCAGCCACAAAAUGCAUAAAAGACGUAUCUCAGACUAC--- .....((((.....(((.((((....((((((((((.((....)).))))))-----)))).....))))(((.........)))......)))......))))....--- ( -35.70) >DroSim_CAF1 6564 93 + 1 AACACUAUACCGGAGUCAAUCUUUUUGGCCCGGUC-----CGU-----CCCC-----GGCCUAUCAAGAUGCAGUCAGAAAGUGCAUAAAAGACGUAUCUCACGGCAA--- ........(((((.(((((.....)))))))))).-----...-----....-----.(((.....((((((.(((...............)))))))))...)))..--- ( -24.26) >DroYak_CAF1 16960 93 + 1 AACACUAGGCCGGAGUCAAUCUUUUUGGCCCGGUC-----CGU-----CUCC-----GGCCUAUCAAGAUGCAGUCAGAAGGUGCAUAAAAAUCGUAUCUCUCGGCAA--- .....((((((((((.(.(((..........))).-----.).-----))))-----))))))..........((((((.(((((.........)))))))).)))..--- ( -28.30) >DroAna_CAF1 41409 101 + 1 AACACUCUGCCGGAGUCAAUCUUUUUGGCCUGGCC-----CGU-----CUCCUGGCUGGCCUAUCAAGAUGCAGUCAGAAAAUGCAUAAAAGAGGUAUCUCACAGCCACAG ........(((((.(((((.....)))))))))).-----...-----....((((((((((......(((((.........))))).....))))......))))))... ( -30.20) >DroPer_CAF1 43273 103 + 1 AACACUCUGCUGGAGUCAAUCUUUUUGGCCUGGCCCCGUCCGGGCCGGGCCG-----GGCCUAUCUAGAUGCAGCCACAAAAUGCAUAAAAGACGUAUCUCAGACUAC--- .....((((.....(((.((((....((((((((((.((....)).))))))-----)))).....))))(((.........)))......)))......))))....--- ( -37.40) >consensus AACACUAUGCCGGAGUCAAUCUUUUUGGCCCGGCC_____CGU_____CCCC_____GGCCUAUCAAGAUGCAGUCAGAAAAUGCAUAAAAGACGUAUCUCACAGCAA___ .((.....(((((.(((((.....))))))))))..................................(((((.........))))).......))............... (-16.69 = -15.75 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:18 2006