Locus 7575

Sequence ID 2L_DroMel_CAF1
Location 20,952,617 – 20,952,720
Length 103
Max. P 0.604460
window12182

overview

Window 2

Location 20,952,617 – 20,952,720
Length 103
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 82.54
Mean single sequence MFE -26.97
Consensus MFE -17.95
Energy contribution -18.15
Covariance contribution 0.20
Combinations/Pair 1.23
Mean z-score -1.83
Structure conservation index 0.67
SVM decision value 0.14
SVM RNA-class probability 0.604460
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20952617 103 + 22407834
-----UAUUUAACAUAACACUCACACGAACGU--AGGCUAUUUUUGGCCC---CUCGGUUAUCUAAACAGAUAAUUAAGUCCGCUUUGAGCCGCGGCUGUCUGCC----AGCUGAUU
-----..............((((..((.....--.(((((....))))).---((..(((((((....)))))))..))..))...))))...((((((.....)----)))))... ( -25.20)
>DroSim_CAF1 6426 103 + 1
-----UAUUUAACAUAACACUCACACGAACAU--AGGCUAUUUUUGGCCC---CUCGGUUAUCUAAACAGAUAAUUAAGUCCGCUUUGAGCCGCGGCUGUCUGCC----AGCUGAUU
-----..............((((..((.....--.(((((....))))).---((..(((((((....)))))))..))..))...))))...((((((.....)----)))))... ( -25.20)
>DroEre_CAF1 14728 103 + 1
-----UAUUUAACACAGCACUCACACGAACGC--GGGCUAUUUUCGGCCU---CUCAGCUAUCUAAACAGAUAAUUAAGUCCGCUUUGAGCCGCGGCUGUCUGCC----AGCUGAUU
-----.........((((.......((((.((--(((((......(((..---....)))((((....)))).....)))))))))))......(((.....)))----.))))... ( -28.50)
>DroYak_CAF1 16817 107 + 1
-----AAUUAAACAUAACACUCACACGAACGU--CGGCUAUUUUUGGCCG---CUCGGUUAUCUAAACAGAUAAUUAAGUCCGCUUUGAGCCGCGGCUGUCUGCCAGCCAGCUGAUU
-----.........................((--(((((.......((.(---(((((((((((....))))))))(((....))).)))).))(((((.....)))))))))))). ( -30.90)
>DroAna_CAF1 41269 103 + 1
-----UAUUUAACAUAACAU---CACUAACCG--AUGCUAUUUUUGGCCUUGGUUAGGUUAUCUAAACAGAUAAUUAAGUCCGCUUUGAGCUGCGGCUGUCUCCC----AGCUGAUU
-----...............---..(((((((--(.((((....)))).))))))))(((((((....))))))).......((.....))..((((((.....)----)))))... ( -27.90)
>DroPer_CAF1 43124 109 + 1
UUUUCGAUUUAACAUAACAUCCACUGGCCACUAGCUGCUAUUUUUAGCCU----UUGGUUAUCUGAACAGAUAAUUAAGUCGGCUCUGAGCCGCUGCUGUCUCUU----AGCUGAUU
.........................(((((..((((((((....)))).(----((((((((((....)))))))))))..)))).)).)))...((((.....)----)))..... ( -24.10)
>consensus
_____UAUUUAACAUAACACUCACACGAACGU__AGGCUAUUUUUGGCCU___CUCGGUUAUCUAAACAGAUAAUUAAGUCCGCUUUGAGCCGCGGCUGUCUGCC____AGCUGAUU
...................................(((((....))))).....((((((.......(((((.....((.((((........)))))))))))......)))))).. (-17.95 = -18.15 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:17 2006