Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,948,930 – 20,949,021 |
Length | 91 |
Max. P | 0.546777 |
Location | 20,948,930 – 20,949,021 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -14.33 |
Energy contribution | -14.21 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.16 |
Mean z-score | -1.85 |
Structure conservation index | 0.66 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20948930 91 - 22407834 UGCUGUCGUAAAUCCCUGAAAGAAAAAAGGCAAA-GGGAGACAAAAUGGAAUUGUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU .(((...((...(((((................)-)))).))........((((((((..((((.(.....).)))).)))))))).))).. ( -23.59) >DroSec_CAF1 2870 91 - 1 UGCUGUCGUAAAUCCCUGAAAGAAAAAACGGAAA-GGGAGAAAAAAUGGAAUUCUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU .((((((((...(((((....(......)....)-))))................(((..((((.(.....).)))).)))))))).))).. ( -21.10) >DroSim_CAF1 2841 91 - 1 UGCUGUCGUAAAUCCCUGAAAGAAAAAACGGAAA-GGGAGACAAAAUGGAAUUGUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU .(((...((...(((((....(......)....)-)))).))........((((((((..((((.(.....).)))).)))))))).))).. ( -24.10) >DroEre_CAF1 11368 81 - 1 UGCUGUCGUAAAUCCUUGAGGGA-AAAGCGGAGGAGG---------UGGAAUUG-AGGGACAGCAGUAGGACACUUGGCCAGCGAUAAGCGU .((((((((...(((.....)))-.....((...(((---------((..((((-........))))....)))))..)).))))).))).. ( -19.10) >DroYak_CAF1 13295 91 - 1 UGCUGUCGUAAAUCCUUGAAAGAAAAAACGGAAGAGGGAGA-AAAAUGGACUUGUAGGGACAGGAAUAGGAUACUUGGCCCACGAUAAGCGA .((((((((...(((((....(......)....)))))...-..............(((.((((.........)))).)))))))).))).. ( -20.00) >consensus UGCUGUCGUAAAUCCCUGAAAGAAAAAACGGAAA_GGGAGA_AAAAUGGAAUUGUUGGGACAGGAGUAGGACACUUGGCCAACGAUAAGCGU .((((((((...((((...................))))..................((.((((.(.....).)))).)).))))).))).. (-14.33 = -14.21 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:16 2006