Locus 7571

Sequence ID 2L_DroMel_CAF1
Location 20,946,250 – 20,946,344
Length 94
Max. P 0.500000
window12177

overview

Window 7

Location 20,946,250 – 20,946,344
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 84.35
Mean single sequence MFE -27.91
Consensus MFE -19.28
Energy contribution -19.40
Covariance contribution 0.11
Combinations/Pair 1.08
Mean z-score -2.06
Structure conservation index 0.69
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20946250 94 + 22407834
GGGACCGGGACCGAAAAAGUGAAUAGCAGAUCGAGGGUUCCAGGUCGUUCGGGGGAGUCCAAAAAAGGGCGUCCCCAAUUCAAACAUGUAUCUA
..((((((((((.......((.....)).......)))))).))))....((((..((((......))))..)))).................. ( -30.64)
>DroPse_CAF1 40664 87 + 1
GGAACC-------AAAAAGUGAAUAGCAGAUAUAGAGUUCCAGGUCGUUUGGGGGAGUCCAAAAAAGGGCGUCCCCAAUUCAAACAUGAAUCGA
((((((-------......((.....))......).)))))...(((.((((((..((((......))))..))))))((((....)))).))) ( -23.40)
>DroSim_CAF1 269 94 + 1
GGGACCGGGACCGAAAAAGUGAAUAGCAGAUCGAGGGUUCCAGGUCGUUCGGGGGAGUCCAAAAAAGGGCGUCCCCAAUUCAAACAUGUAUCUA
..((((((((((.......((.....)).......)))))).))))....((((..((((......))))..)))).................. ( -30.64)
>DroEre_CAF1 8873 78 + 1
GGGUCCGG-ACC---------------GGAUCGAGAGUUCCAGGUCGUGCGGGGGAGUCCAAAAAAGGGCGUCCCCAAUUCAAACAUGUAUCUC
((((.(((-(((---------------(((.(....).))).))))....((((..((((......))))..))))..........)).)))). ( -29.00)
>DroYak_CAF1 10702 94 + 1
GGGCCCGGGACCGAAAAAUGGAAUAGCAGAUCGAGCGUUCCAGGUCGUUCGGGGGAGUCCAAAAAAGGGCGUCCCCAAUUCAAACAUGUAUCUA
.((((((....)).....((((((.((.......))))))))))))....((((..((((......))))..)))).................. ( -30.40)
>DroPer_CAF1 31592 87 + 1
GGAACC-------AAAAAGUGAAUAGCAGAUAUAGAGUUCCAGGUCGUUUGGGGGAGUCCAAAAAAGGGCGUCCCCAAUUCAAACAUGAAUCGA
((((((-------......((.....))......).)))))...(((.((((((..((((......))))..))))))((((....)))).))) ( -23.40)
>consensus
GGGACCGG_ACC_AAAAAGUGAAUAGCAGAUCGAGAGUUCCAGGUCGUUCGGGGGAGUCCAAAAAAGGGCGUCCCCAAUUCAAACAUGUAUCUA
(((((...............................))))).........((((..((((......))))..)))).................. (-19.28 = -19.40 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:12 2006