Locus 7570

Sequence ID 2L_DroMel_CAF1
Location 20,946,107 – 20,946,202
Length 95
Max. P 0.889911
window12176

overview

Window 6

Location 20,946,107 – 20,946,202
Length 95
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 70.17
Mean single sequence MFE -31.57
Consensus MFE -14.59
Energy contribution -14.27
Covariance contribution -0.31
Combinations/Pair 1.19
Mean z-score -2.19
Structure conservation index 0.46
SVM decision value 0.96
SVM RNA-class probability 0.889911
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20946107 95 - 22407834
ACAAAGCCACUGGGCAAUAGUGCCAAACACAGUGCACGUAUCUGCAAGAUACACGAACGAUGGCCCCCCAGA-AAUGG------GGAGACU-GGGGCAAG----AGG---------
.....(((.((((((....(((((.......).))))(((((.....)))))..........))))((((..-..)))------)......-)))))...----...--------- ( -31.50)
>DroPse_CAF1 40457 97 - 1
ACAAAGCCACUGGGCAAUAGUGGCAAACAAAGUGCACGUAUCUGCAAGAUACAAGAGCCACGACGCUGCUGCUGAGGG------CGAGAGCGAGGGCAGC----AGG---------
.....(((....)))....(((((.......(....)(((((.....)))))....)))))....((((((((....(------(....))...))))))----)).--------- ( -35.30)
>DroAna_CAF1 34042 97 - 1
ACAAAGCCACUAGGCAAUAGUGCCA-ACAAAGUGCACGUAUCUGCAAGAUACACGAACAG--------C--A-UAGUC------AGGGAUA-GGGGCCAGCUAUAGAAGCAGGAAU
......((((((.((....(((((.-.....).))))(((((.....))))).......)--------)--.-)))).------.))....-....((.(((.....))).))... ( -20.90)
>DroPer_CAF1 31379 103 - 1
ACAAAGCCACUGGGCAAUAGUGGCAAACAAAGUGCACGUAUCUGCAAGAUACACGAGCCACGACGCUGCUGGUGAGGGCCAGAGCGAGAGCGAGGGCAGC----AGG---------
.....(((((((.....)))))))........(((..(((((.....)))))....(((.((.((((.(((((....)))))))))....))..))).))----)..--------- ( -38.60)
>consensus
ACAAAGCCACUGGGCAAUAGUGCCAAACAAAGUGCACGUAUCUGCAAGAUACACGAACCACGACGCUGCUGA_GAGGG______CGAGAGC_AGGGCAAC____AGG_________
.....(((((((.....))))))).......((.(..(((((.....)))))................................(....)...).))................... (-14.59 = -14.27 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:12 2006