Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,170,509 – 2,170,614 |
Length | 105 |
Max. P | 0.744609 |
Location | 2,170,509 – 2,170,614 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.54 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -26.66 |
Energy contribution | -26.91 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -1.72 |
Structure conservation index | 0.79 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2170509 105 - 22407834 ACAGAAACGGAGAUUCUGGCUCGGAUUCCCGGGCCGCAGAUGGAG-ACUCUGCU------------UGCUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU ........((((.....(((((((....)))))))(((((.(...-.)))))).------------..)))).............(((((((....(((....)))...))))))).. ( -35.60) >DroSec_CAF1 13407 106 - 1 ACAGAAACGGAGAUUCUGGCUUGGAUUCCCGGGCCGCAGAUGGGGUACUCUGCU------------UGCUCCUCUAUUGUCGCCAAAUUCGUAAUUAGCAGCAGCUUAAAUGAGUUCU ........((((.....(((((((....)))))))(((((.(.....)))))).------------..)))).............(((((((....(((....)))...))))))).. ( -30.20) >DroEre_CAF1 14244 102 - 1 ACAGAAACGGAGAUUCCGACUCGGAUUCCCGGGCCGCAGAUGGGCCACUCUG----------------CUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU .......(((.((.((((...)))).)))))(((.(((((.((((......)----------------))).))...))).))).(((((((....(((....)))...))))))).. ( -28.90) >DroYak_CAF1 14959 118 - 1 ACAGAAACGGAGAUUCCGACUCGGAUUCCCGGGCAGCAGAUGGAGCACUCUGCUCCGCUGCUUCGCUGCUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU ..((((.(((.((.((((...)))).)))))((.(((((.((((((.....)))))))))))))((((((.((..(((((..........))))).)).)))))).........)))) ( -40.00) >consensus ACAGAAACGGAGAUUCCGACUCGGAUUCCCGGGCCGCAGAUGGAGCACUCUGCU____________UGCUCCUCUAUUGUCGCCAAAUUCAUAAUUAGCAGCAGCUUAAAUGAGUUCU .......(((.((.(((.....))).)))))(((.((((..((((((...................))))))....)))).))).(((((((....(((....)))...))))))).. (-26.66 = -26.91 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:54 2006