Locus 7567

Sequence ID 2L_DroMel_CAF1
Location 20,943,969 – 20,944,086
Length 117
Max. P 0.951253
window12169

overview

Window 9

Location 20,943,969 – 20,944,086
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.64
Mean single sequence MFE -42.13
Consensus MFE -38.97
Energy contribution -39.30
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.69
Structure conservation index 0.92
SVM decision value 1.41
SVM RNA-class probability 0.951253
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20943969 117 + 22407834
UUCAGCGUGGCACACAUCUUUCUGCCAAGCCUAAGAGGCGACCCAGUCUCGAGGAAUCUUUCCUGCUUCUUUUCUUUUGGGUCCCAGGAAGCUGGCCAGGGAAUCACAGU---UCCCGUU
...(((.((((.((...(((((((....(((.....)))(((((((....((((((.(......).))))))....))))))).))))))).))))))((((((....))---))))))) ( -41.20)
>DroSec_CAF1 30242 120 + 1
UUCAGUGUGGCACACAUCUUUCUGGCAAGCCUAAGAGGCGACCCAGUCUCGAGGAAUCUUUCCUGCUUCUUUUCUUUUGGGUCCCAGGAAGCUGGCCAGGGAAUCACAAUCAAUCCCGUU
.......((((.((...((((((((...(((.....)))(((((((....((((((.(......).))))))....))))))))))))))).))))))((((...........))))... ( -41.00)
>DroSim_CAF1 27325 117 + 1
UUCAGUGUGGCACACAUCUUUCUGGCAAGCCUAAGAGGCGACCCAGUCUCGAGGAAUCUUUCCUGCUUCUUUUCUUUUGGGUCCCAGGAAGCUGGCCAGGGAAUCACAGU---UCCCGUU
.......((((.((...((((((((...(((.....)))(((((((....((((((.(......).))))))....))))))))))))))).))))))((((((....))---))))... ( -44.20)
>consensus
UUCAGUGUGGCACACAUCUUUCUGGCAAGCCUAAGAGGCGACCCAGUCUCGAGGAAUCUUUCCUGCUUCUUUUCUUUUGGGUCCCAGGAAGCUGGCCAGGGAAUCACAGU___UCCCGUU
.......((((.((...((((((((...(((.....)))(((((((....((((((.(......).))))))....))))))))))))))).))))))((((...........))))... (-38.97 = -39.30 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:05 2006