| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,943,713 – 20,943,809 |
| Length | 96 |
| Max. P | 0.653488 |
| Location | 20,943,713 – 20,943,809 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.17 |
| Mean single sequence MFE | -34.99 |
| Consensus MFE | -30.48 |
| Energy contribution | -31.76 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20943713 96 - 22407834 UUUUCGGCGGCCCAG------------------------GAAUGCCGUCGAAGUUAAUAAUUUUCAUGAAUUAGCUCUGGCCCAAGAGCGAGAUGCACUUUGUAUUUUUUAUGGCUUUGC .((((((((((....------------------------....))))))))))..........((((((....(((((......)))))(((((((.....)))))))))))))...... ( -29.80) >DroSec_CAF1 29962 120 - 1 UUUUCGGCGGCCCAGGCGAGGAAGAUGAUAGUGCGGCUGGAAUGCCGUCGAAGUUCAUAAUUUUCACGAAUUAGCUCUGACCCAAGAGCGAGAUGCACUUUGUAUUUUUUAUGGCUUUGC .((((((((((((((.((...............)).))))...)))))))))).((((((.............(((((......)))))(((((((.....)))))))))))))...... ( -37.46) >DroSim_CAF1 27045 120 - 1 UUUUCGGCGGCCCAGGCGAGGAAGAUGAUAGCGCGGCUGGAAUGCCGUCGAAGUUCAUAAUUUUCAUGAAUUAGCUCUGGCCCAAGAGCGGGAUGCACUUUGUAUUUUUUAUGGCUUUGC .((((((((((((((.((.(...........).)).))))...))))))))))..........(((((((...(((((......))))).((((((.....)))))))))))))...... ( -37.70) >consensus UUUUCGGCGGCCCAGGCGAGGAAGAUGAUAG_GCGGCUGGAAUGCCGUCGAAGUUCAUAAUUUUCAUGAAUUAGCUCUGGCCCAAGAGCGAGAUGCACUUUGUAUUUUUUAUGGCUUUGC .((((((((((((((.((...............)).))))...))))))))))..........((((((....(((((......)))))(((((((.....)))))))))))))...... (-30.48 = -31.76 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:04 2006