Locus 7564

Sequence ID 2L_DroMel_CAF1
Location 20,939,179 – 20,939,299
Length 120
Max. P 0.973543
window12164

overview

Window 4

Location 20,939,179 – 20,939,299
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -49.63
Consensus MFE -48.92
Energy contribution -48.70
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.51
Structure conservation index 0.99
SVM decision value 1.71
SVM RNA-class probability 0.973543
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20939179 120 + 22407834
CUGGGAGUGGGUCAGAGUGGAGCGGCGCCUUUUCGCUUUGAUAAUGGCAAACGCUCGGGAGGUCUGUCAGUGGCUUCUUUGCACUCUGGCCCUCUCUUUGGCGUCCGCAUCCUUCGUCCU
(..((((.((((((((((((((((..(((...((.....))....)))...)))))((((((((.......))))))))..))))))))))).))))..)((....))............ ( -51.10)
>DroSec_CAF1 25435 120 + 1
UUGGGAGUGGGUCAGAGUGGAGCGGCGCCUUUUCGCUUUGAUAAUGGCAAAUGCUCCGGAGGUCUGUCAGUGGCUUCUUUGCACUCUGGCCCUCUCUUUGGCGUCCGCAUCCUUCGUCCU
..(((((.((((((((((((((((..(((...((.....))....)))...))))))(((((((.......)))))))....)))))))))).))))).((((...........)))).. ( -48.90)
>DroSim_CAF1 23772 120 + 1
CUGGGAGUGGGUCAGAGUGGAGCGGCGCCUUUUCGCUUUGAUAAUGGCAAAUGCUCCGGAGGUCUGUCAGUGGCUUCUUUGCACUCUGGCCCUCUCUUUGGCGUCCGUAUCCUUCGUCCU
..(((((.((((((((((((((((..(((...((.....))....)))...))))))(((((((.......)))))))....)))))))))).))))).((((...........)))).. ( -48.90)
>consensus
CUGGGAGUGGGUCAGAGUGGAGCGGCGCCUUUUCGCUUUGAUAAUGGCAAAUGCUCCGGAGGUCUGUCAGUGGCUUCUUUGCACUCUGGCCCUCUCUUUGGCGUCCGCAUCCUUCGUCCU
..(((((.((((((((((((((((..(((...((.....))....)))...))))).(((((((.......)))))))...))))))))))).))))).((((...........)))).. (-48.92 = -48.70 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:00 2006