| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,937,982 – 20,938,141 |
| Length | 159 |
| Max. P | 0.815630 |
| Location | 20,937,982 – 20,938,101 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.26 |
| Mean single sequence MFE | -36.20 |
| Consensus MFE | -26.50 |
| Energy contribution | -27.17 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20937982 119 + 22407834 CCACCCCCC-UCCUUCCCAAUCACAAUUUCCCAGAGCUUAAGGAAAAGCUCCUCUUCGAGCAUGUAUGUCUGAUAUUGGGUGAUAUUGGGUGGUCUGGGGGGUGUGUCUCAUCCGCUUUA .((((((((-.((..((((((....(((.((((((((((......))))))....(((..((....))..)))...)))).))))))))).))...))))))))................ ( -43.60) >DroSec_CAF1 24239 109 + 1 CCACCCCCCUUCCUUGCCAAUCACAAUUUCCCAGAGCUUAAGGAAAAGCUCCUCUCCGAGCAUGUAUGUCUGAUAUUGGGUGGCAU-----------GGGGGUGUGUCUCAUCCGCUUUA .((((((((.....(((((..........((((((((((......)))))).....((..((....))..))....))))))))).-----------))))).))).............. ( -32.50) >DroSim_CAF1 22611 109 + 1 CCACCCCCCUUCCUUGCCAAUCACACUUUCCCAGAGCUUAAGGAAAAGCUCCUCUCCGAGCAUGUAUGUCUGAUAUUGGGUGGCAU-----------GGGGGUGUGUCUCAUCCGCUUUA .((((((((.....(((((..........((((((((((......)))))).....((..((....))..))....))))))))).-----------))))).))).............. ( -32.50) >consensus CCACCCCCCUUCCUUGCCAAUCACAAUUUCCCAGAGCUUAAGGAAAAGCUCCUCUCCGAGCAUGUAUGUCUGAUAUUGGGUGGCAU___________GGGGGUGUGUCUCAUCCGCUUUA .(((((((......(((((..........((((((((((......)))))).....((..((....))..))....)))))))))............)))))))................ (-26.50 = -27.17 + 0.67)
| Location | 20,938,021 – 20,938,141 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.83 |
| Mean single sequence MFE | -37.47 |
| Consensus MFE | -31.30 |
| Energy contribution | -31.19 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20938021 120 + 22407834 AGGAAAAGCUCCUCUUCGAGCAUGUAUGUCUGAUAUUGGGUGAUAUUGGGUGGUCUGGGGGGUGUGUCUCAUCCGCUUUAGGGGAUGUGAAGCCCGAAUGUCUUCGAUAAUAGAAUAUAU .......((((......))))((((((.((((.(((((((.((((((.((....))...((((...((.(((((.(....).))))).)).)))).))))))))))))).)))))))))) ( -37.00) >DroSec_CAF1 24279 109 + 1 AGGAAAAGCUCCUCUCCGAGCAUGUAUGUCUGAUAUUGGGUGGCAU-----------GGGGGUGUGUCUCAUCCGCUUUAGGGGAUGUGAAGCCCGAAUGUCUUCGAUAAUAGAAAAUAU .......((((......))))((((...((((.(((((((.(((((-----------..((((...((.(((((.(....).))))).)).))))..)))))))))))).))))..)))) ( -38.30) >DroSim_CAF1 22651 109 + 1 AGGAAAAGCUCCUCUCCGAGCAUGUAUGUCUGAUAUUGGGUGGCAU-----------GGGGGUGUGUCUCAUCCGCUUUAGGGGAUGUGAAGCCCGAAUGUAUUCGAUAAUAGAAAAUAU .......((((......))))((((...((((.(((((((((.(((-----------..((((...((.(((((.(....).))))).)).))))..)))))))))))).))))..)))) ( -37.10) >consensus AGGAAAAGCUCCUCUCCGAGCAUGUAUGUCUGAUAUUGGGUGGCAU___________GGGGGUGUGUCUCAUCCGCUUUAGGGGAUGUGAAGCCCGAAUGUCUUCGAUAAUAGAAAAUAU .......((((......))))((((...((((.(((((((.(((((.............((((...((.(((((.(....).))))).)).))))..)))))))))))).))))..)))) (-31.30 = -31.19 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:59 2006