Locus 7561

Sequence ID 2L_DroMel_CAF1
Location 20,936,813 – 20,936,930
Length 117
Max. P 0.831842
window12155

overview

Window 5

Location 20,936,813 – 20,936,930
Length 117
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 97.15
Mean single sequence MFE -28.13
Consensus MFE -24.39
Energy contribution -25.17
Covariance contribution 0.78
Combinations/Pair 1.02
Mean z-score -2.58
Structure conservation index 0.87
SVM decision value 0.72
SVM RNA-class probability 0.831842
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20936813 117 + 22407834
AGAUUUAAAUUCAAACAAAUGAAUUGCAUUUGUAAUCCCUGGCAGAAAUGAAGAUAACCUUUUUAUUUUGCGAAAAACAAGCUUCUGUUUGCUUUUCCACCGUGAUGUUAAAUUGAA
.(((((((..(((.(((((((.....)))))))........((((((..((((.....))))...))))))(((((.(((((....))))).))))).....)))..)))))))... ( -25.00)
>DroSec_CAF1 23117 117 + 1
AGAUUUAAAUUCAAACAAAUGAAUUGCAUUUGUAAUCCCUGGCAGAAAUGAAGAUAACCUUUUUAUUUUGGCGAAAACAAGCUUCUGUUUGCUUUUCCGCCGUGAUGUCAAAUUGAA
.........((((((((((((.....)))))))......(((((((((((((((.....))))))))))(((((((((((((....))))).)))).))))....)))))..))))) ( -29.70)
>DroSim_CAF1 21454 117 + 1
AGAUUUAAAUUCAAACAAAUGAAUUGCAUUUGUAAUCCCUGGCAGAAAUGAAGAUAACCUUUUUAUUUUGGCGAAAACAAGCUUCUGUUUGCUUUUCCGCCGUGAUGUCAAAUUGAA
.........((((((((((((.....)))))))......(((((((((((((((.....))))))))))(((((((((((((....))))).)))).))))....)))))..))))) ( -29.70)
>consensus
AGAUUUAAAUUCAAACAAAUGAAUUGCAUUUGUAAUCCCUGGCAGAAAUGAAGAUAACCUUUUUAUUUUGGCGAAAACAAGCUUCUGUUUGCUUUUCCGCCGUGAUGUCAAAUUGAA
.........((((((((((((.....)))))))......(((((((((((((((.....))))))))))(((((((((((((....))))).)))).))))....)))))..))))) (-24.39 = -25.17 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:53 2006