Locus 7560

Sequence ID 2L_DroMel_CAF1
Location 20,936,528 – 20,936,648
Length 120
Max. P 0.650185
window12154

overview

Window 4

Location 20,936,528 – 20,936,648
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.17
Mean single sequence MFE -28.63
Consensus MFE -23.40
Energy contribution -23.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.82
SVM decision value 0.24
SVM RNA-class probability 0.650185
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20936528 120 + 22407834
CCAGAUUUAUUGCUGCUGUGAUUGGGUUAGCUGGAAAAGUGCUUUGGUUUUCCUUCACCACCACCAUCACAGUAAUCCUAUCUCAAUGUUUUUGUUCUUUUGGCGAAAAGCGAAAAUCUU
..((((((.(((((((((((((.((((.....((((((.(.....).))))))......))).).)))))))))..............((((((((.....)))))))))))))))))). ( -31.20)
>DroSec_CAF1 22880 101 + 1
CCAGAUUUAUUGCUGCUGUGAUUGGGUUAGCUGGAAAAGUGCUUUGGUUUUCCUUCACCACCACCAUCACAGUAAUCCUAUCUCAAUGUUUUUGUUCUUUU-------------------
.((((..(((((.(((((((((.((((.....((((((.(.....).))))))......))).).))))))))).........)))))..)))).......------------------- ( -23.40)
>DroSim_CAF1 21193 120 + 1
CCAGAUUUAUUGCUGCUGUGAUUGGGUUAGCUGGAAAAGUGCUUUGGUUUUCCUUCACCACCACCAUCACAGUAAUCCUAUCUCAAUGUUUUUGUUCUUUUGGCGAAAAGCGAGAAUCUU
..((((((.(((((((((((((.((((.....((((((.(.....).))))))......))).).)))))))))..............((((((((.....)))))))))))))))))). ( -31.30)
>consensus
CCAGAUUUAUUGCUGCUGUGAUUGGGUUAGCUGGAAAAGUGCUUUGGUUUUCCUUCACCACCACCAUCACAGUAAUCCUAUCUCAAUGUUUUUGUUCUUUUGGCGAAAAGCGA_AAUCUU
.((((..(((((.(((((((((.((((.....((((((.(.....).))))))......))).).))))))))).........)))))..)))).......................... (-23.40 = -23.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:52 2006