Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,167,739 – 2,167,836 |
Length | 97 |
Max. P | 0.519700 |
Location | 2,167,739 – 2,167,836 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.94 |
Mean single sequence MFE | -33.95 |
Consensus MFE | -21.51 |
Energy contribution | -21.32 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.67 |
Structure conservation index | 0.63 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2167739 97 + 22407834 CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUUAUGCUUGCCCCA----AGCUGGCGGGGAUGCCAACGAGG--------------GGCAGUGGACA ..((((((.............))))))..(((((....)))))..........(((.(((((.----.(.(((((....))))).)..))--------------))))))..... ( -31.32) >DroSec_CAF1 9406 97 + 1 CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAGGAAUUUUAUGUUUGCCCCA----AGCUGGCGGGGAUGCCAACGAGG--------------GGCAGUGGACA ..((((((.............)))))).((((((....))))))........((((((((((.----.(.(((((....))))).)..))--------------))))...)))) ( -34.82) >DroEre_CAF1 9749 115 + 1 CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUAAUGUUUGCCCCUUUAUAUCGAAAGGGGUUGCCAACGAGGGGGCAGAAAAAGGGGCCAGUGGACA ..((((((.............))))))..(((((....))))).........(((((((((((((...((....))..(((((........)))))..))))))))....))))) ( -32.92) >DroYak_CAF1 9784 114 + 1 CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUAAUGUUUGCCCCU-UAUACCGAAAGGGGUUGCCAACAAGGAGCAGCAAAAAGGGGGCAGUGGACA ..((((((.............)))))).(..(((((....(((((.........)))))((((-(...((....)).((((((......).)))))...))))))))))..)... ( -36.72) >consensus CAUCAACAUCAUCAUCAUCAUUGUUGGACUGCUGCCUGCAGCAAGAAUUUAAUGUUUGCCCCA____AGCGAAAGGGGAUGCCAACGAGG______________GGCAGUGGACA ....................(((((((..(((((....)))))...............((((............))))...)))))))........................... (-21.51 = -21.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:53 2006