Locus 7559

Sequence ID 2L_DroMel_CAF1
Location 20,936,376 – 20,936,488
Length 112
Max. P 0.514938
window12153

overview

Window 3

Location 20,936,376 – 20,936,488
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.29
Mean single sequence MFE -33.00
Consensus MFE -19.56
Energy contribution -19.45
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.93
Structure conservation index 0.59
SVM decision value -0.04
SVM RNA-class probability 0.514938
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20936376 112 + 22407834
GUAGUUAAUACAUCGCUAUUA--------UCGCUUAAUUGAAAGCGCCUUCAAACGGAUACCAAUGCUUUUGGCCUACUAUGUGUACACAAGUGGGGGGCAGAUUUUUGGCAGUGUACAU
........(((((.((((..(--------((((((......))))((((...........((((.....))))((((((.(((....))))))))))))).)))...)))).)))))... ( -32.80)
>DroSec_CAF1 22732 108 + 1
GAAGCGAA-GCAUCGCUAUGGCAGCACUGCGUCUUAAUUGAAAGC----------GGAAGCCAAUGCUUUUGGCCUACUAUGUGUACACAAGUAG-GGGCAGAUUUUUGGCAGUGUACAU
..(((((.-...)))))(((...(((((((.......(..(((((----------(........))))))..)((((((.(((....))))))))-)............))))))).))) ( -34.30)
>DroSim_CAF1 21049 104 + 1
GAAGCGAA-GCAUCGCUAUGG---CACUGCGUCUUAAUUGAAAGC----------GGAAACAAAUGCUU-UGGCCUACUAUGUGUACACAAGUAG-GGGCAGAUUUUUGGCAGUGUACAU
..(((((.-...)))))...(---((((((..........(((((----------(........)))))-).((((.((((.((....)).))))-)))).........))))))).... ( -31.90)
>consensus
GAAGCGAA_GCAUCGCUAUGG___CACUGCGUCUUAAUUGAAAGC__________GGAAACCAAUGCUUUUGGCCUACUAUGUGUACACAAGUAG_GGGCAGAUUUUUGGCAGUGUACAU
.........((((.((((.....................((((((....................)))))).((((.((((.((....)).)))).)))).......)))).)))).... (-19.56 = -19.45 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:51 2006