Locus 7557

Sequence ID 2L_DroMel_CAF1
Location 20,934,764 – 20,934,884
Length 120
Max. P 0.897714
window12149

overview

Window 9

Location 20,934,764 – 20,934,884
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.17
Mean single sequence MFE -30.50
Consensus MFE -25.22
Energy contribution -26.62
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.83
SVM decision value 1.00
SVM RNA-class probability 0.897714
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20934764 120 + 22407834
AGGGGCACAUAUGCAGCCGCACACACGAGCAGGGACAUUAACAAUAAAUAUAAUGGCCCGUCGAACAAAUAUAAAUUGACACGGAGAUAACCUUUUGUGGCGUCUCCGACGCUCAGACGC
.(.(((.........))).)......((((.(((.(((((..........))))).)))(((((...........))))).(((((((..((......)).)))))))..))))...... ( -35.00)
>DroSec_CAF1 21045 120 + 1
AGGAGCACAUAUGCAGCCGCACACACGAGCAGGGACAUUAACAAUAAAUAUAAUGGCCCGUCGAACAAAUAUAAAUUGACACGGAGAUAACCUUUUGUGGCGUCUCCGACGCUCAGACGC
.((.(((....)))..))........((((.(((.(((((..........))))).)))(((((...........))))).(((((((..((......)).)))))))..))))...... ( -32.70)
>DroSim_CAF1 19356 120 + 1
AGGAGCACAUAUGCAGCCGCACACACGAGCAGGGACAUUAACAAUAAAUAUAAUGGCCCGUCGAACAAAUAUAAAUUGACACGGAGAUAACCUUUUGUGGCGUCUCCGACGCUCAGACGC
.((.(((....)))..))........((((.(((.(((((..........))))).)))(((((...........))))).(((((((..((......)).)))))))..))))...... ( -32.70)
>DroEre_CAF1 18654 107 + 1
AGGAACACACAUGCAGCCGCACACACGAGCAGGGACAUUAACAAUAAAUAUAAUG--CCGUCUAACAAAUAUAAAUUGACACGGAGAUAACCUUUUGUGGCGUCUCCG-----------U
...............((((......)).))..((.(((((..........)))))--))(((...............)))((((((((..((......)).)))))))-----------) ( -21.16)
>DroYak_CAF1 19577 119 + 1
AG-AACACAUAUGCAGCUGCACACACGAGCAGGGACAUUAACCAUAAAUAUAAUGGCCCGUCUAACAAAUAUAAAUUGACACGGAGAUAACCUUUUGUGGCGUCUCCGAUGCUCAGAAGC
..-........(((....))).....((((((((.(((((..........))))).)))(((...............))).(((((((..((......)).))))))).)))))...... ( -30.96)
>consensus
AGGAGCACAUAUGCAGCCGCACACACGAGCAGGGACAUUAACAAUAAAUAUAAUGGCCCGUCGAACAAAUAUAAAUUGACACGGAGAUAACCUUUUGUGGCGUCUCCGACGCUCAGACGC
...........(((....))).....((((.(((.(((((..........))))).)))(((((...........))))).(((((((..((......)).)))))))..))))...... (-25.22 = -26.62 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:47 2006