| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,934,054 – 20,934,173 |
| Length | 119 |
| Max. P | 0.565587 |
| Location | 20,934,054 – 20,934,173 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.63 |
| Mean single sequence MFE | -33.22 |
| Consensus MFE | -23.86 |
| Energy contribution | -24.02 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20934054 119 - 22407834 AUUCAAUUGGUUUGGGGGACAGUCAUUAAUGUGAUGGGCAUAUUAAUUUCAGGCAAAUUAGCCCCAAAACGGGCUGAGUGGGGGCAAAUUAAUUAUUUUAAAAACUUUCC-CCCCUCGAA ......((((...((((((.(((.(((((((((.....)))))))))........((((.(((((...((.......)).))))).)))).............))).)))-))).)))). ( -33.20) >DroSec_CAF1 20393 119 - 1 AUUCAAUUGGUUUGGGGGACAGUCAUUAAUGUGAUGGGCAUAUUAAUUUCAGGCAAAUUAGCCCCAAAACGGGCUGACUGGGGGCAAAUUAAUUAUUUUAAAAACUUUCC-CCCUUCGAA ......((((...((((((.(((..((((((((.....))))))))(..(((.....(((((((......))))))))))..)....................))).)))-))).)))). ( -34.80) >DroSim_CAF1 18698 119 - 1 AUUCAAUUGGUUUGGGGGACAGUCAUUAAUGUGAUGGGCAUAUUAAUUUCAGGCAAAUUAGCCCCAAAACGGGCUGACUGGGGGCAAAUUAAUUAUUUUAAAAACUUUCC-CCCUUCGAA ......((((...((((((.(((..((((((((.....))))))))(..(((.....(((((((......))))))))))..)....................))).)))-))).)))). ( -34.80) >DroEre_CAF1 17809 113 - 1 AUUCAAUUGGUUUGG-GGAGAGCCAUUAAUGUGAUGGGCAUAUUAAUUUCAGGCAAAUUAGCCCCACAACGGGCUGACUG-----AAAUUAAUUAUUUGAAAAACUUUUA-CCCUUCGAG ......((((...((-(((((((((((.....))))).((.(((((((((((.....(((((((......))))))))))-----))))))))....)).....))))).-))).)))). ( -32.10) >DroYak_CAF1 18718 119 - 1 AUUCAAUUGGUUUGGGGGACAGUCAUUAAUGUGAUGGGCAUAUUAACUUCAGGCAAAUUAGACCCAAAACGGGCUGACUGGGGG-AAAUUAAUUAUUUUAAAAACUUUUCCCCCUUCGAA ......((((...((((((.(((..((((.(((((......(((..((((((.....((((.(((.....))))))))))))).-.)))..))))).))))..)))..)))))).)))). ( -31.20) >consensus AUUCAAUUGGUUUGGGGGACAGUCAUUAAUGUGAUGGGCAUAUUAAUUUCAGGCAAAUUAGCCCCAAAACGGGCUGACUGGGGGCAAAUUAAUUAUUUUAAAAACUUUCC_CCCUUCGAA ..........((((((((...((((((((((((.....)))))))))....)))...(((((((......)))))))...................................)))))))) (-23.86 = -24.02 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:46 2006