Locus 7555

Sequence ID 2L_DroMel_CAF1
Location 20,933,866 – 20,933,977
Length 111
Max. P 0.668659
window12147

overview

Window 7

Location 20,933,866 – 20,933,977
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.76
Mean single sequence MFE -24.58
Consensus MFE -16.11
Energy contribution -17.95
Covariance contribution 1.84
Combinations/Pair 1.15
Mean z-score -2.12
Structure conservation index 0.66
SVM decision value 0.29
SVM RNA-class probability 0.668659
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20933866 111 - 22407834
AGCCACAACGUUGCAUAAUUUCUAUGUGGCAAGCAGCACGAUAUGCGAGUAUUUAAAGAAUACAAUUUAUUCAUUUGCAUAAUCUCUUGUGCUUG---------UUUUAAUUCUAACAUU
.((((((.................))))))((((((((((((((((((((...((((........))))...))))))))).....)))))).))---------)))............. ( -26.43)
>DroSec_CAF1 20214 102 - 1
AGCCACAACGUUGCAUAAUUUCUAUGUGGCAAGCAGCAUGAGA---------AUAAAGAAUACAAUUUAUUUAUUUGCAUAAUCUCUGGUGCUUG---------UUUUAAUUCUAACAUU
.((((((.................))))))(((((.((.((((---------.((..(((((.........)))))...)).)))))).))))).---------................ ( -20.93)
>DroSim_CAF1 18510 111 - 1
AGCCACAACGUUGCAUAAUUUCUAUGUGGCAAGCAGCACGAUAUGCAAGUAUUUAAAGAAUACAAUUUAUUUAUUUGCAUAAUCUCUGGUGCUUG---------UUUUAAUUCUAACAUU
.((((((.................))))))(((((.((.((((((((((((..((((........))))..))))))))).)))..)).))))).---------................ ( -29.53)
>DroEre_CAF1 17622 108 - 1
AGCCACAGCGUUGCAUAAUUUCUAUGUGGUAAGCAGUACGU--UGCGAGUAUUUAAAGAAUACAAUUUAUUCAUUUGCAUAAUCUCCUGUGCUCG---------UUUUAAUUA-UACAUU
.((((((.................))))))..((((....)--)))..((((((((((((((.....)))))....(((((......)))))...---------.)))))..)-)))... ( -18.53)
>DroYak_CAF1 18522 119 - 1
AGCCACAACGUUGCAUAAUUUCUAUGUGGUGGGCAGUACGAUAUGCGAGUAUUUAAAGAAUACAAUUUAUUUAUUUGCAUAAUUUCUUGUGCUUGUUUAUCUUGUUUUAAUUU-AACAUU
.........((((((((.....)))))((((((((((((((((((((((((..((((........))))..)))))))))).....)))))).))))))))............-)))... ( -27.50)
>consensus
AGCCACAACGUUGCAUAAUUUCUAUGUGGCAAGCAGCACGAUAUGCGAGUAUUUAAAGAAUACAAUUUAUUUAUUUGCAUAAUCUCUUGUGCUUG_________UUUUAAUUCUAACAUU
.((((((.................))))))....((((((((((((((((...((((........))))...))))))))).....)))))))........................... (-16.11 = -17.95 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:45 2006