| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,932,258 – 20,932,378 |
| Length | 120 |
| Max. P | 0.571112 |
| Location | 20,932,258 – 20,932,378 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.25 |
| Mean single sequence MFE | -37.42 |
| Consensus MFE | -33.38 |
| Energy contribution | -33.22 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.571112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20932258 120 + 22407834 CCCACUUUUAUUCCCGCCCUAACAACCGGCAUUUGCAAUUGGAAGGCGCUCGUUGAGCAUCGACCGCACAAAUAAUUGGAACUUAGUCAAGUUGAUGGGGCGCAGAAAGGGAUGGCAAGA ....(((((((((((((((((.((((.(((..((.((((((....(((.(((........))).))).....)))))).))....)))..)))).)))))))......))))))).))). ( -35.90) >DroSec_CAF1 18694 120 + 1 CCCACUUUUAUUCCCGCCCUAACAACCGGCAUUUGCAAUUGGAAGGCGCUCGUUGAGCAUCGACCGCACAAAUAAUUGGAACUUAGUCAAGUUGAUGGGGCGCAGAAAGGGAAGGCAAGA ....(((...(((((((((((.((((.(((..((.((((((....(((.(((........))).))).....)))))).))....)))..)))).)))))).......)))))...))). ( -34.71) >DroSim_CAF1 16908 120 + 1 ACCACUUUUAUUCCCGCCCUAACAACCGGCAUUUGCAAUUGGAAGGCGCUCGUUGAGCAUCGACCGCACAAAUAAUUGGAACUUAGUCAAGUUGAUGGGGCGCAGAAAGGGAAGGCAAGA ....(((...(((((((((((.((((.(((..((.((((((....(((.(((........))).))).....)))))).))....)))..)))).)))))).......)))))...))). ( -34.71) >DroEre_CAF1 16117 118 + 1 CCCACUCU--UUGCCGCCCCAACAACCGGCAUUUGCAAUUGGAAGGCGCUCGUUGAGCAUCGACCGCACAAAUAAUUGGAACUUAGUCAAGUUGAUGGGGCGCAGAAAGGGACGGCAACA .((.((.(--((((.((((((.((((.(((..((.((((((....(((.(((........))).))).....)))))).))....)))..)))).))))))))))).))))..(....). ( -41.30) >DroYak_CAF1 16844 120 + 1 CCCACCCGUGUUCCCGCCCUAACAACCGGCAUUUGCAAUUGGAAGGCGCUCGUUGAGCAUCGACCGCACAAAUAAUUGGAACUUAGUCAAGUUGAUGGGGCGCAGAAAGGGAUGGCCGGA .((((((...(((.(((((((.((((.(((..((.((((((....(((.(((........))).))).....)))))).))....)))..)))).)))))))..))).))).)))..... ( -40.50) >consensus CCCACUUUUAUUCCCGCCCUAACAACCGGCAUUUGCAAUUGGAAGGCGCUCGUUGAGCAUCGACCGCACAAAUAAUUGGAACUUAGUCAAGUUGAUGGGGCGCAGAAAGGGAAGGCAAGA ....(((((.((..(((((((.((((.(((..((.((((((....(((.(((........))).))).....)))))).))....)))..)))).)))))))..)))))))......... (-33.38 = -33.22 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:39 2006