Locus 7549

Sequence ID 2L_DroMel_CAF1
Location 20,931,107 – 20,931,217
Length 110
Max. P 0.711077
window12135

overview

Window 5

Location 20,931,107 – 20,931,217
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.32
Mean single sequence MFE -33.06
Consensus MFE -29.10
Energy contribution -28.70
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.31
Structure conservation index 0.88
SVM decision value 0.38
SVM RNA-class probability 0.711077
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20931107 110 + 22407834
----------CUGCGGCGCCUGCAGCGGAAUUUGGCAAACUGGAAAACUGCAUGAAAAUAUGCAAAAACGCCGAAAUGAUUGCGGCUGAGCCGCACUGAAUUUCCCAGUUUUUCCUACCC
----------((((((...)))))).((((......(((((((.....((((((....))))))........(((((...((((((...))))))....))))))))))))))))..... ( -33.40)
>DroSec_CAF1 17541 110 + 1
----------CUGCGGCGCCUGCAGCGGAAUUUGGCAAACUGGAAAACUGCAUGAAAAUAUGCAAAAACGUCGAAAUGAUUGCGGCUGAGCCGCACUGAAUUUCCCCGCUUUUCCUACCC
----------((((((...)))))).((((...(((............((((((....)))))).....(..(((((...((((((...))))))....)))))..)))).))))..... ( -31.30)
>DroSim_CAF1 15759 110 + 1
----------CUGCGGCGCCUGCAGCGGAAUUUGGCAAACUGGAAAACUGCAUGAAAAUAUGCAAAAACGUCGAAAUGAUUGCGGCUGAGCCGCACUGAAUUUCCCCGCUUUUCCUACCC
----------((((((...)))))).((((...(((............((((((....)))))).....(..(((((...((((((...))))))....)))))..)))).))))..... ( -31.30)
>DroEre_CAF1 15070 110 + 1
----------GUGCGGCGCCUGCAGCGGAAUUCGGCAAACUGGAAAACUGCAUGAAAAUAUGCAAAAACGUCGAAAUGAUUGCGGCUGAGCCGCACAGAACUUCCCCCUUCUCCCUGCCC
----------((((((((((.((((((...((((((.....(.....)((((((....)))))).....)))))).)).)))))))...)))))))........................ ( -33.20)
>DroYak_CAF1 15751 120 + 1
ACUACAACCUCUGCGGCGCCUGCAGCGGAAUUCGGCAAACUGGAAAACUGCAUGAAAAUAUGCAAAAACGUCGAAAUGAUUGCGGCUGAGCCGCACAGAAUUUCACCGUUUUCCCUUCCC
.......((.((((((...)))))).)).............(((((((((((((....))))))........(((((...((((((...))))))....)))))...)))))))...... ( -36.10)
>consensus
__________CUGCGGCGCCUGCAGCGGAAUUUGGCAAACUGGAAAACUGCAUGAAAAUAUGCAAAAACGUCGAAAUGAUUGCGGCUGAGCCGCACUGAAUUUCCCCGUUUUUCCUACCC
...........(((((((((.((((((...((((((.....(.....)((((((....)))))).....)))))).)).)))))))...))))))......................... (-29.10 = -28.70 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:34 2006