Locus 7547

Sequence ID 2L_DroMel_CAF1
Location 20,928,962 – 20,929,082
Length 120
Max. P 0.890255
window12132

overview

Window 2

Location 20,928,962 – 20,929,082
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.31
Mean single sequence MFE -30.04
Consensus MFE -21.58
Energy contribution -22.50
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -2.58
Structure conservation index 0.72
SVM decision value 0.96
SVM RNA-class probability 0.890255
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20928962 120 + 22407834
CAUAAGUUAGUGACAUUAAUGCGCUUAAUUAAAGCAGCGCCUGAAUGUCAACAACAACAACAACAAUAGCAAUUUGCAUUGUCAGUCUGGGGAAAAAAGUAUACUUUAGUUAACAGACGG
.....(((..(((((((...(((((..........)))))...)))))))..))).......(((((.((.....)))))))..(((((..((..((((....))))..))..))))).. ( -33.30)
>DroSec_CAF1 13951 119 + 1
CAUAAGUUAGUGACAUUAAUGCGCUUAAUUAAAGCAGCGCCUGAAUGUCAACAACAACAACAACAAUAGCAAUUUGCAUUGCCAGUCUGGGGAA-AAAGUAUACUUUAGUUAACAGAAGG
.....(((..(((((((...(((((..........)))))...)))))))..)))........((((.((.....))))))((..((((..((.-((((....))))..))..)))).)) ( -27.50)
>DroSim_CAF1 13353 120 + 1
CAUAAGUUAGUGACAUUAAUGCGCUUAAUUAAAGCAGCGCCUGAAUGUCAACAACAAAAACAACAAUAGCAAUUUGCAUUGCCAGUCUGGGGAAAAAAGUAUACUUUAUUUAACAGACGG
.....(((..(((((((...(((((..........)))))...)))))))..)))........((((.((.....))))))((.(((((..(((.((((....)))).)))..))))))) ( -33.00)
>DroEre_CAF1 12772 115 + 1
CAUAAGUUAGUGGCAUUAAUGCGCUUAAUUAAAGCAGCGCCUGAAUGUCAACAGCAACAACAC---AAUCAAUUUGCAUUGUCAGUCUGGGGAA-AAACUAUCCUGUAGCUUGCG-ACGG
.....(((..(((((((...(((((..........)))))...)))))))..)))........---.......(((((....(((..(((....-...)))..))).....))))-)... ( -26.40)
>DroYak_CAF1 14013 119 + 1
CAUAAGUUAGUGACAUUAGUGCGCUUAAUUAAAGCAGCGCCUGAAUGUCAACAACAACAACAACCAUGUUAAUUUGCAUUGCCGGUCUGGGGAA-AAAUUAUACUUUAGUCCGCAAACUG
.....(((..(((((((.((((((((.....)))).))))...)))))))..)))...((((....))))........((((.((.((((((..-........)))))).)))))).... ( -30.00)
>consensus
CAUAAGUUAGUGACAUUAAUGCGCUUAAUUAAAGCAGCGCCUGAAUGUCAACAACAACAACAACAAUAGCAAUUUGCAUUGCCAGUCUGGGGAA_AAAGUAUACUUUAGUUAACAGACGG
.....(((..(((((((...(((((..........)))))...)))))))..))).............(((((....)))))..(((((..((..((((....))))..))..))))).. (-21.58 = -22.50 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:32 2006