Locus 7546

Sequence ID 2L_DroMel_CAF1
Location 20,927,531 – 20,927,651
Length 120
Max. P 0.958870
window12131

overview

Window 1

Location 20,927,531 – 20,927,651
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.66
Mean single sequence MFE -23.06
Consensus MFE -18.56
Energy contribution -18.88
Covariance contribution 0.32
Combinations/Pair 1.08
Mean z-score -2.10
Structure conservation index 0.80
SVM decision value 1.49
SVM RNA-class probability 0.958870
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20927531 120 + 22407834
CAUUUCUCCACAUCUACAUACAAAUAAAUUCACGUUUGCCAGUCAGAGUGUGCGUGUAUUCCCAAGUAUACAUGCAUUUAUACAAACACGCAAAUUAUGCAAACGGCUACCGCAAAUAAC
.................................((((((.((((.....((((((((((........))))))))))............(((.....)))....))))...))))))... ( -22.90)
>DroSec_CAF1 12527 116 + 1
CAUUUCUCCACAUCUACAUACAA----AUUCACGUUUGGCAGUAAGAGUGUGCGUGUAUUCCCAAGUAUACAUGCAUUUAUACAAACACGCAAAUUAUGCAAACGGCUACCGCAAAUAAC
.......................----.....(((((....(((.((((((..((((((......))))))..)))))).)))......(((.....))))))))((....))....... ( -20.50)
>DroSim_CAF1 11931 116 + 1
CAUUUCUCCACAUCUACAUACAA----AUUCACGUUUGGCAGUAAGAGUGUGCGUGUAUUCCCAAGUAUACAUGCAUUUAUACAAACACGCAAAUUAUGCAAACGGCUACCGCAAAUAAC
.......................----.....(((((....(((.((((((..((((((......))))))..)))))).)))......(((.....))))))))((....))....... ( -20.50)
>DroEre_CAF1 11299 114 + 1
CAUAGCCCCACAUC-ACAUACAA----AUUAACGUUUGUCAGUAAGAGUGUGCGUGUAUA-CCAAGUAUACAUGCAUUUAUACAAACACGCAAAUUAUGCAAACGGCUACCGCAAAUAAC
..(((((.......-........----......((((((..((((....(((((((((((-(...))))))))))))))))))))))..(((.....)))....)))))........... ( -28.80)
>DroYak_CAF1 12588 110 + 1
CAU----CUACAU--ACAUACCA----AUUCACAGUUGUCAGUGAGGGUGUGCGUGUAUUCCCAAGUAUACAUGCAUUUAUACAAACACGCAAAUUAUGCAAACGGCUACCGCAAAUAAC
...----.((((.--.((((((.----..((((........)))).))))))..))))...((..(((((........)))))......(((.....)))....)).............. ( -22.60)
>consensus
CAUUUCUCCACAUCUACAUACAA____AUUCACGUUUGGCAGUAAGAGUGUGCGUGUAUUCCCAAGUAUACAUGCAUUUAUACAAACACGCAAAUUAUGCAAACGGCUACCGCAAAUAAC
................................(((((....(((.((((((..((((((......))))))..)))))).)))......(((.....))))))))((....))....... (-18.56 = -18.88 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:31 2006