Locus 7545

Sequence ID 2L_DroMel_CAF1
Location 20,925,925 – 20,926,043
Length 118
Max. P 0.608745
window12130

overview

Window 0

Location 20,925,925 – 20,926,043
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 68.29
Mean single sequence MFE -26.02
Consensus MFE -9.02
Energy contribution -11.89
Covariance contribution 2.87
Combinations/Pair 1.12
Mean z-score -2.60
Structure conservation index 0.35
SVM decision value 0.15
SVM RNA-class probability 0.608745
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20925925 118 - 22407834
GUGAGCUAAUUUAGUACCCUUCGUUUUGGGCAAAAAUAUCAAUUAUGUAAAUGGAUUUAAGUGAUUGAUUUUUAUGCCUGCCCAUGAACG-ACAUUGCAAGAAAUAA-AACUUCAGCACU
....(((......(((....((((((((((((.(((.(((((((((.((((....)))).))))))))).))).....)))))).)))))-)...)))..(((....-...))))))... ( -26.90)
>DroSec_CAF1 11032 101 - 1
CUGAGCUAAUUUAGUACCCUUCGUUUUGGGCUUAAAUAUCAAUUAU----------UUAAAUGAUUGAUUUUUGGGCCAGCCCAUGAACG-ACAUAGCAAGAAAUAA-AACUU-------
....((((....((....))((((((((((((((((.(((((((((----------....))))))))).))))....)))))).)))))-)..)))).........-.....------- ( -24.80)
>DroSim_CAF1 10429 101 - 1
CUGAGCUAAUUUAGUACCCUUCGUUUUGGGCUUAAAUAUCAAUUAU----------UUAAAUGAUUGAUUUUUGGGCCAGCCCAUGAACG-ACAUAGCAAGAAAUAA-AACUU-------
....((((....((....))((((((((((((((((.(((((((((----------....))))))))).))))....)))))).)))))-)..)))).........-.....------- ( -24.80)
>DroYak_CAF1 10959 105 - 1
CUGAGCUAAAUUAGUAGUCUUCGUUUUGGGCAAGAACCAAAACUAUUUUUAGGGAUUUGCGUGAUCGUA---------------AGAAGAAAUAAAACUAGAAAUAGUAGCAUCAGUAAU
(((((((...(((....((((((((((((.......))))))).............(((((....))))---------------))))))..))).((((....))))))).)))).... ( -27.60)
>consensus
CUGAGCUAAUUUAGUACCCUUCGUUUUGGGCAAAAAUAUCAAUUAU__________UUAAAUGAUUGAUUUUUGGGCCAGCCCAUGAACG_ACAUAGCAAGAAAUAA_AACUU_______
....((((...))))....(((((....((((((((.(((((((((..............))))))))).)))))))).....)))))................................ ( -9.02 = -11.89 +   2.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:30 2006