Locus 7544

Sequence ID 2L_DroMel_CAF1
Location 20,925,695 – 20,925,810
Length 115
Max. P 0.926808
window12129

overview

Window 9

Location 20,925,695 – 20,925,810
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.50
Mean single sequence MFE -23.96
Consensus MFE -19.88
Energy contribution -20.08
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.83
SVM decision value 1.18
SVM RNA-class probability 0.926808
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20925695 115 - 22407834
CC----UUUUUUCC-AUUGAUUUUUACAUACCCACUGUGAGGCAUUUCUGUUUGGGGCUUUAUCGGCGUUUGCAUAAUGCAGCAAUUCCAAUUAGUUUUGCCAACUAAAUUUCAAUUACA
..----........-(((((..((((((((.....)))).((((...(((.((((((((.....)))(((.((.....)))))...))))).)))...))))...))))..))))).... ( -24.30)
>DroSec_CAF1 10818 115 - 1
CC----UUUUUUCC-AUUGAUUUUUACAUACCCACUGUGAGGCAUUUCUGUUUGGGGCUUUAUCGGCGUUUGCAUAAUGCAGCAAUUCCAAUUAGUUUUGCCAACUAAAUUUCAAUUACA
..----........-(((((..((((((((.....)))).((((...(((.((((((((.....)))(((.((.....)))))...))))).)))...))))...))))..))))).... ( -24.30)
>DroSim_CAF1 10202 115 - 1
CC----UUUUUUCC-AUUGAUUUUUACAUACCCACUGUGAGGCAUUUCUGUUUGGGGCUUUAUCGGCGUUUGCAUAAUGCAGCAAUUCCAAUUAGUUUUGCCAACUAAAUUUCAAUUACA
..----........-(((((..((((((((.....)))).((((...(((.((((((((.....)))(((.((.....)))))...))))).)))...))))...))))..))))).... ( -24.30)
>DroEre_CAF1 9573 118 - 1
CCAAUAGUUUAUCCGGCUGAUUUUUGUAAACCCACUUUGAGGCAUUUCUCUUUG-GGCUUUAUCGGCGU-UGCAUAAUGCAGCGAUUCCAAUUAGUUUUGCCAACUAAAUUUCAAUUACA
....(((((.....((((((((...(((((((((....((((....))))..))-)).))))).(((((-(((.....))))))...)))))))))).....)))))............. ( -26.20)
>DroYak_CAF1 10746 114 - 1
CC----GUUUUUCC-AUUGAUUUUUAUAUACCCACUUUGAGGCAUUUCUGUUUG-GGCUUUAUCGGCGUUUGCAUAAUGCAGCAAUUCCAAUUAGUUUUGCCAACUAAAUUUCAAUUACA
..----........-(((((..((((......(.....).((((...(((.(((-((((.....)))(((.((.....)))))....)))).)))...))))...))))..))))).... ( -20.70)
>consensus
CC____UUUUUUCC_AUUGAUUUUUACAUACCCACUGUGAGGCAUUUCUGUUUGGGGCUUUAUCGGCGUUUGCAUAAUGCAGCAAUUCCAAUUAGUUUUGCCAACUAAAUUUCAAUUACA
...............(((((..((((((((.....)))).((((...(((.((((((((.....)))((.(((.....)))))...))))).)))...))))...))))..))))).... (-19.88 = -20.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:29 2006