Locus 7542

Sequence ID 2L_DroMel_CAF1
Location 20,923,950 – 20,924,064
Length 114
Max. P 0.919402
window12127

overview

Window 7

Location 20,923,950 – 20,924,064
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.46
Mean single sequence MFE -34.96
Consensus MFE -25.57
Energy contribution -26.72
Covariance contribution 1.15
Combinations/Pair 1.00
Mean z-score -2.49
Structure conservation index 0.73
SVM decision value 1.13
SVM RNA-class probability 0.919402
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20923950 114 + 22407834
AAAUUAACGAAAACUAAAUUUAAACACGUCUUGCUGCGGUCCACCCAGCGGAGAUGUGUUUCAUUAGCUGCAUCUG------CAGCUAGCCCCGUCUCGCUCGCCGCCGAUUAGCCGUCC
......(((............(((((((((((((((.((....)))))).))))))))))).....((((.(((.(------(.((.(((........))).)).)).)))))))))).. ( -36.50)
>DroSec_CAF1 9158 114 + 1
AAAUUAACGAAAACUAAAUUUAAACACGUCUUGCUGCGGUCCACCCAGCGGAGAUGUGUUUCAUUAACUGCAGCUG------CAGCUAGCCCCGUCUCGCUCGCCCCCGAUUAGCCGUCC
........((...((((....(((((((((((((((.((....)))))).))))))))))).......(((....)------))((.(((........))).))......))))...)). ( -29.00)
>DroSim_CAF1 8485 114 + 1
AAAUUAACGAAAACUAAAUUUAAACACGUCUUGCUGCGGUCCACCCAGCGGAGAUGUGUUUCAUUAGCUGCAGCUG------CAGCUAGCCCCGUCUCGCUCGCCCCCGAUUAGCCGUCC
........((...((((....(((((((((((((((.((....)))))).)))))))))))..((((((((....)------))))))).....................))))...)). ( -34.70)
>DroEre_CAF1 8069 120 + 1
AAAUUAACGAAAACUAAAUUUAAACACGUCUUGCUGCGGUCCACCCAGCGGAGAUGUGUUUCAUUAGCUGCAGCUGCAGUUGCAGCUGGCUCCGUCUCGCUCGCGCCCGAUUAGCCAUCU
.....................(((((((((((((((.((....)))))).)))))))))))....(((((((((....)))))))))((((..(((..((....))..))).)))).... ( -44.10)
>DroYak_CAF1 8974 116 + 1
UAAUUAACAAAUACUAAAUUUAAACACGUCUUGCUGCGGUCCACCCAGCGGAGAUGUGUUUCAUUAAGUGCAGUU--AGCUCCAUCUCGCUCG--CUCGCUCGCUCUAGAUUAAUCAUCC
.............(((.....(((((((((((((((.((....)))))).))))))))))).....((((.(((.--(((........))).)--)))))).....)))........... ( -30.50)
>consensus
AAAUUAACGAAAACUAAAUUUAAACACGUCUUGCUGCGGUCCACCCAGCGGAGAUGUGUUUCAUUAGCUGCAGCUG______CAGCUAGCCCCGUCUCGCUCGCCCCCGAUUAGCCGUCC
.......(((...........(((((((((((((((.((....)))))).)))))))))))........((((((((....)))))).))......)))..................... (-25.57 = -26.72 +   1.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:27 2006