Locus 754

Sequence ID 2L_DroMel_CAF1
Location 2,159,000 – 2,159,120
Length 120
Max. P 0.508814
window1240

overview

Window 0

Location 2,159,000 – 2,159,120
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.94
Mean single sequence MFE -41.90
Consensus MFE -31.85
Energy contribution -31.42
Covariance contribution -0.44
Combinations/Pair 1.38
Mean z-score -2.02
Structure conservation index 0.76
SVM decision value -0.05
SVM RNA-class probability 0.508814
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2159000 120 - 22407834
GCAAAGUUGUGGGGCAUCCAGAAGAACCAUCUGUCCAUGAAUUACGACAAGAUGUCGCGUGCCCUGCGUUAUUACUACAGGGUAAACAUACUGCGCAAAGUGCAGGGCGAGCGACAUUGC
((...(((((((..(((.((((.......))))...)))..)))))))..((((((((.((((((((....(((((....)))))....(((......))))))))))).)))))))))) ( -45.50)
>DroVir_CAF1 963 120 - 1
GCCAAGCUGUGGGGCAUCCAAAAGAACCAUCUGUCGAUGAACUACGACAAGAUGUCGCGCGCCCUGCGCUAUUAUUACCGCGUCAACAUUCUGCGCAAGGUGCAGGGCGAGCGGCAUUGC
.....(.(((((..((((....(((....)))...))))..))))).)..((((((((.((((((((((((....)...(((.((......)))))..))))))))))).)))))))).. ( -49.20)
>DroGri_CAF1 1018 120 - 1
GCCAAAUUGUGGGGCAUCCAGAAGAAUCAUCUGUCGAUGAACUAUGACAAAAUGUCGCGCGCCUUGCGCUACUAUUAUCGUGUGAACAUCUUGCGUAAGGUGCAAGGCGAACGGCAUUGC
......(..(((..((((((((.......))))..))))..)))..)...(((((((..(((((((((((.........(((....))).........)))))))))))..))))))).. ( -43.07)
>DroWil_CAF1 937 120 - 1
GCCAAACUCUGGGGUAUACAAAAGAAUCAUCUAUCGAUGAAUUAUGACAAAAUGUCGCGGGCCUUGCGCUAUUAUUAUCGUGUCAAUAUAUUGCGUAAAGUACAGGGCGAGCGUCAUUGC
.(((.....)))..............(((((....)))))..........((((.(((..((((((..((....(((.((((.........)))))))))..))))))..))).)))).. ( -28.10)
>DroMoj_CAF1 1010 120 - 1
GCCAAGCUGUGGGGCAUCCAGAAGAACCAUUUAUCGAUGAACUAUGACAAGAUGUCGCGCGCCCUGCGGUAUUACUACCGUGUCAACAUCCUGCGCAAGGUGCAGGGCGAGCGGCAUUGC
.....(..((((..((((..(((......)))...))))..))))..)..((((((((.((((((((((((....))))(((.((......))))).....)))))))).)))))))).. ( -46.70)
>DroAna_CAF1 858 120 - 1
GCCAAGCUCUGGGGCAUCCAGAAGAACCAUCUGUCCAUGAACUACGACAAGAUGUCGCGCGCUCUGCGCUACUACUAUCGCGUCAACAUUCUGCGCAAGGUGCAGGGCGAACGACAUUGC
.......(((((.....))))).........((((..........)))).(((((((..(((((((((((.........(((.((......)))))..)))))))))))..))))))).. ( -38.80)
>consensus
GCCAAGCUGUGGGGCAUCCAGAAGAACCAUCUGUCGAUGAACUACGACAAGAUGUCGCGCGCCCUGCGCUAUUACUACCGUGUCAACAUACUGCGCAAGGUGCAGGGCGAGCGGCAUUGC
.......(((((..(((.....(((....)))....)))..)))))....((((((((.(((((((((((........((((.........))))...))))))))))).)))))))).. (-31.85 = -31.42 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:49 2006