Locus 7539

Sequence ID 2L_DroMel_CAF1
Location 20,918,985 – 20,919,105
Length 120
Max. P 0.842671
window12122

overview

Window 2

Location 20,918,985 – 20,919,105
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.42
Mean single sequence MFE -36.20
Consensus MFE -30.93
Energy contribution -30.81
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.85
SVM decision value 0.76
SVM RNA-class probability 0.842671
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20918985 120 - 22407834
AUACUUUUCCGCCGGCUCUGGAUGGCUAAUGGUCAUCCUGGUUGCCUUCUUCUGUCUGGGCACUCAAAUUUUGGCUUCUGGAGGUGACUACUUCCUUUCCUACUGGUAAGUAUGCUUAAU
((((((..(((((((....(((((((.....)))))))((..(((((.(....)...)))))..))....)))))....((((((....)))))).........)).))))))....... ( -36.30)
>DroSec_CAF1 4342 120 - 1
AUACUUUUCCGCCGGCUCUGGAUGGCUAAUGGUCGUCCUGGUUGCCUUCUUCUGCCUGGGCACUCAAAUUUUGGCUUCUGGAGGCGACUACUUCCUUUCCUACUGGUAAGUAUGCUUAAU
((((((....(((((....(((((((.....)))))))(((((((((((....(((................)))....)))))))))))............)))))))))))....... ( -39.19)
>DroSim_CAF1 3602 120 - 1
AUACUUUUCCGCCGGCUCUGGAUGGCUAAUGGUCGUCCUGGUUGCCUUCUUCUGCCUGGGCACUCAAAUUUUGGCUUCUGGUGGCGACUACUUCCUUUCCUACUGGUAAGUAUGCUUAAU
((((((....(((((....(((.((....(((((((((..(..(((......(((....)))..........)))..)..).))))))))...))..)))..)))))))))))....... ( -35.49)
>DroEre_CAF1 3393 120 - 1
AUAUUUUUCCGCCGGCUCUGGAUGGUUGAUGGUCGUCCUGGUGGCCUUCUUCUGCCUGGGCACUCAAGUUUUGGCUUCUGGCGGGGACUACUUCCUUUCCUACUGGUAAGUAUGCUGGAA
...........(((((...(((.((..(.(((((.(((..(.((((..(((.(((....)))...)))....)))).)..).)).))))))..))..)))((((....)))).))))).. ( -37.40)
>DroYak_CAF1 3396 120 - 1
AUAUUUCUCCGCUGGCUCUGGAUGGGUAAUGGUCGUCCUGGUUGCAGUCUUCUGCCUGGGCACUCAAAUUUUGGCUUCUGGCGGGGACUACUUCCUUUCCUACUGGUAAGUAUGCUUAAA
.....(((((((..(..(..(((((((.......((((.....((((....))))..)))))))))...))..)...)..))))))).(((((((.........)).)))))........ ( -32.61)
>consensus
AUACUUUUCCGCCGGCUCUGGAUGGCUAAUGGUCGUCCUGGUUGCCUUCUUCUGCCUGGGCACUCAAAUUUUGGCUUCUGGAGGCGACUACUUCCUUUCCUACUGGUAAGUAUGCUUAAU
((((((....(((((....(((.((....(((((((((..(..(((......(((....)))..........)))..)..).))))))))...))..)))..)))))))))))....... (-30.93 = -30.81 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:22 2006