Locus 7533

Sequence ID 2L_DroMel_CAF1
Location 20,914,805 – 20,914,908
Length 103
Max. P 0.772273
window12106

overview

Window 6

Location 20,914,805 – 20,914,908
Length 103
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 71.42
Mean single sequence MFE -31.53
Consensus MFE -13.34
Energy contribution -16.52
Covariance contribution 3.17
Combinations/Pair 1.28
Mean z-score -1.89
Structure conservation index 0.42
SVM decision value 0.53
SVM RNA-class probability 0.772273
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20914805 103 + 22407834
CAGUUCUGGAGUUUCUCAUAAUGCGAAUGUUUUCUAGGUGGUUAAACCACAAAGGAUGUGGUGCUUG-CACCUCAGAAAAAGAAGGGGAAUCCUCCGGAGCUUC-----------
.((((((((((.(((((......(.....(((((((((((.....((((((.....)))))).....-))))).)))))).)...)))))..))))))))))..----------- ( -37.90)
>DroVir_CAF1 9465 96 + 1
CCGGCUUUUCGCAGCGCAUUAAGCGAAUGUUUUCCAAAUGCUGCAACCAGUUGGCAUUUGGAAAGUCC-UGCUCGGUCUUAA-CGG--CA------GCAGCUUCCU---------
..((((.(((((..........)))))..((((((((((((((........))))))))))))))..(-(((.((.......-)))--))------).))))....--------- ( -28.80)
>DroSec_CAF1 646 103 + 1
CAGUUCUGGAGUUUCUCAUAAUGCGAAUGUUUUCUAGGUGGUUAAACCACAAAGGAUGUGGUGCUAG-CACCUCAGAAUAGGAAUGGGAAUCCUCCUGAGCUUC-----------
.(((((.((((.(((((((...((....)).(((((((((.(...((((((.....))))))...).-))))).)))).....)))))))..)))).)))))..----------- ( -35.10)
>DroSim_CAF1 646 103 + 1
CAGUUCUGGAGUUUCUCAUAAUGCGAAUGUUUUCUAGGUGGUUAAACCACAAAGGAUGUGGUGCUAG-CACCUCAGAAUAGGAAUGGGAAUCCUCCUGAGCUUC-----------
.(((((.((((.(((((((...((....)).(((((((((.(...((((((.....))))))...).-))))).)))).....)))))))..)))).)))))..----------- ( -35.10)
>DroEre_CAF1 684 114 + 1
CACUUCUGGAGCUUCUCAUAACCCGAAUGUUUUCUAAGUGGCCAAGCCACAAAGGAUGUGGUGCUUG-CACCUCAGAAUAGGAAUGUGCGUCCUCUUUAGUUUCCUCCGUAUUCU
.(((...((((...(.((((..((.......((((..(((((...)))))..))))((.((((....-)))).)).....))..)))).)..))))..))).............. ( -26.10)
>DroYak_CAF1 692 114 + 1
CACUUCUUGAGUUUCUCAUAAUGCGAAUGUUUUCUAAGUGGUUAAUCCACAAAGGAUGUGGUGCUUG-CACCUCAGAAUAGGAAUCGGAAUCUCUUUGAGCUUCCUGUGUAUUCU
.......((((...)))).((((((...(.((((((.((((.....))))......((.((((....-)))).))...)))))).)((((.(((...))).))))..)))))).. ( -26.20)
>consensus
CAGUUCUGGAGUUUCUCAUAAUGCGAAUGUUUUCUAAGUGGUUAAACCACAAAGGAUGUGGUGCUUG_CACCUCAGAAUAGGAAUGGGAAUCCUCCUGAGCUUC___________
..((((.((((.(((((((............((((..((((.....))))..))))((.((((.....)))).))........)))))))..)))).)))).............. (-13.34 = -16.52 +   3.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:07 2006