Locus 7532

Sequence ID 2L_DroMel_CAF1
Location 20,909,482 – 20,909,597
Length 115
Max. P 0.500000
window12105

overview

Window 5

Location 20,909,482 – 20,909,597
Length 115
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 85.04
Mean single sequence MFE -38.68
Consensus MFE -26.66
Energy contribution -27.05
Covariance contribution 0.39
Combinations/Pair 1.23
Mean z-score -2.42
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20909482 115 - 22407834
ACUCCAGGAACUGGGACGAGAUUCAAGCUCCGCGGAGACGAGCUAUACAUUUGAGACAGAUCUCAAGAUCAACUCAGUUUGGAGUGGAGAUGAGGACCAGUUACUGGAGGUUUUU
.((((((.((((((..(..(.(((..(((((.((....))..........(((((...((((....))))..)))))...))))).))).)..)..)))))).))))))...... ( -42.80)
>DroSec_CAF1 104755 115 - 1
ACUCCAGGAACUGGGACGAGAUUCAAGCGUCGCGGAGACGAGCUAUACAUUUGAGACCGAUCUGAAGAUCAACUCAGUUUGGAGUGGAGAUGAGGACCAGUUACUGGAGGUUUUU
.((((((.((((((..(..(.(((.(((....((....)).)))...(((((.((((.((..((.....))..)).)))).)))))))).)..)..)))))).))))))...... ( -41.40)
>DroSim_CAF1 96598 115 - 1
ACUCCAGGAACUGGGACGAGAUUCAGGCGCCGCGGAGACGAGCUAUACAUUUGAGACCGAUCUCAAGAUCAACUCAGUUUGGAGUGGAGAUGAGGACCAGUUACUGGAGGUUUAU
.((((((.((((((..(....(((((((....((....)).)))...((.(((((...((((....))))..)))))..))...)))).....)..)))))).))))))...... ( -40.50)
>DroEre_CAF1 94287 115 - 1
ACUCCAGGAACUGGGUCGGGAUUCAAGGGGCGAGGAGACGGGGUAUACAUUUGAGACCGAUCUCAAGAUUAACUCAGUUUGGAGUGGAGAUGAAGACCAGUUACUGGAGGUUUUU
.((((((.((((((.((((..(((((((.((..(....)...))...).)))))).))))((((.......((((......)))).))))......)))))).))))))...... ( -38.10)
>DroYak_CAF1 86342 115 - 1
ACUCCAGGAACUGGGACAAGGUUCAAGGGCCGAGGAGACGAGAUAUACAUUUGAGACCGAUCUCAAGAUCAACUCAGUUUGGAGUGGAGAUGAAGACCAGUUACUGGAGGUUUUU
.((((((.((((((.....((((....))))..(....)........(((((....((((((....)))).((((......)))))))))))....)))))).))))))...... ( -36.30)
>DroAna_CAF1 78371 115 - 1
UCUUGAGGAUGCGGGCAGGGAAUCCAGUUCCCAGGAGACCGGAUACAUUUUUGAAACGGAUCUUCAUGUAAACUCAGUUUGGAGCCGACAGGAGGAUCAGUUGCUGGAGAUCUUU
((((.((.((.(((.(.((((((...))))))..)...))).))..........(((.(((((((.(((...(((......)))...))).))))))).))).)).))))..... ( -33.00)
>consensus
ACUCCAGGAACUGGGACGAGAUUCAAGCGCCGAGGAGACGAGCUAUACAUUUGAGACCGAUCUCAAGAUCAACUCAGUUUGGAGUGGAGAUGAGGACCAGUUACUGGAGGUUUUU
.((((((.((((((.......((((........(....)........(((((.((((.((((....))))......)))).)))))....))))..)))))).))))))...... (-26.66 = -27.05 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:06 2006