Locus 7531

Sequence ID 2L_DroMel_CAF1
Location 20,907,600 – 20,907,714
Length 114
Max. P 0.666448
window12104

overview

Window 4

Location 20,907,600 – 20,907,714
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.25
Mean single sequence MFE -43.10
Consensus MFE -21.85
Energy contribution -23.52
Covariance contribution 1.67
Combinations/Pair 1.22
Mean z-score -1.91
Structure conservation index 0.51
SVM decision value 0.28
SVM RNA-class probability 0.666448
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20907600 114 + 22407834
CAUCAUUUCCAUCGCCGGAGUCACCAUCGCCUACCAGCGAGCCCAAGCCGGCAGUGUAGAUGCCCAAUUUAAAGCUGCUGGCUUGGGAACGGCCUGCGUGGAGCAGAAAUUCCA
..((..(((((.(((.((.(((....((((......)))).((((((((((((((.(((((.....)))))..))))))))))))))...)))))))))))))..))....... ( -48.50)
>DroVir_CAF1 118166 114 + 1
GGCCAUUACGCUCAUCCGCAUCGCCAUCGCCGACAAGCGAGCUCAGGCCUGCGGUGUAGAUGCCCAGCUUAAAGCUGCUCGCCUCUGCGCGACCCGCGUGCAGCAGGAACUCCA
(((.........((((..((((((..((((......))))((....))..))))))..))))..((((.....))))...))).(((((((.....)))))))..((....)). ( -40.60)
>DroPse_CAF1 104691 114 + 1
GAUCGCUCUCAUCGCUAGCGUCGCCAUCGCCCACCACCGCACCCAGGCCGGCUGUGUAGAUGCCCAGCUUAAAGCUGCUGGCCUGGGCAUGGCCCGCCUGCAGUAGAAACUCCA
......(((.((.((..(((..(((((.((........)).(((((((((((.........)))((((.....))))..)))))))).))))).)))..)).)))))....... ( -42.20)
>DroEre_CAF1 92405 114 + 1
CGUCAUUUCCUUCGCCGGAGUCACCAUCGCCCACCAGCGAGCCCAAACCGGCAGUGUAGAUGCCCAAUUUAAAGCUGCUGGCUUGGGAACGCCCGGCAUGGAGCAAAAAUUCCA
......((((...(((((.((.....((((......)))).(((((.((((((((.(((((.....)))))..)))))))).)))))...)))))))..))))........... ( -42.60)
>DroAna_CAF1 76488 114 + 1
UAUCCGUGCCAUCAUCGGUGCCGCCAUCGCCCACCAUGGAGCCCAAUCCGGCGGUAUAGAUUCCCAAUUUGAAGCUGCUGGCCUGGGCGCGUCCGGCAUGCAACAGGAAUUCCA
..((((..((......))..).(((..(((((.....)).(((((..((((((((.(((((.....)))))..))))))))..))))))))...)))........)))...... ( -42.50)
>DroPer_CAF1 107751 114 + 1
GAUCGCUCUCAUCGCUAGCGUCGCCAUCGCCCACCACCGCACCCAGGCCGGCUGUGUAGAUGCCCAGCUUAAAGCUGCUGGCCUGGGCAUGGCCCGCCUGCAGUAGAAACUCCA
......(((.((.((..(((..(((((.((........)).(((((((((((.........)))((((.....))))..)))))))).))))).)))..)).)))))....... ( -42.20)
>consensus
GAUCAUUCCCAUCGCCGGCGUCGCCAUCGCCCACCAGCGAGCCCAAGCCGGCAGUGUAGAUGCCCAACUUAAAGCUGCUGGCCUGGGCACGGCCCGCAUGCAGCAGAAACUCCA
.............((((.........(((........))).((((((((((((((...((........))...))))))))))))))..))))..................... (-21.85 = -23.52 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:05 2006