Locus 7530

Sequence ID 2L_DroMel_CAF1
Location 20,902,473 – 20,902,571
Length 98
Max. P 0.909544
window12103

overview

Window 3

Location 20,902,473 – 20,902,571
Length 98
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 80.51
Mean single sequence MFE -25.85
Consensus MFE -15.44
Energy contribution -16.25
Covariance contribution 0.81
Combinations/Pair 1.24
Mean z-score -2.36
Structure conservation index 0.60
SVM decision value 1.07
SVM RNA-class probability 0.909544
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20902473 98 - 22407834
GAAAAAUAAUUUUGAAAUUGC-UCCCCUUGUGGGGG--ACAAUGCUAAUACUAACCUAGGUUAGUAUUAUGAGGCCAGCAAGACAAGUAGGUCUCUUCAAU
...........(((((((((.-.((((....)))).--.))))..((((((((((....)))))))))).((((((.((.......)).))))))))))). ( -35.20)
>DroSec_CAF1 97757 90 - 1
GAAAAAUAAUUUCGAAAUUGC-UCCCCUUGUGGGGG--ACAAUGC----GUUAAGCUAGGUUAGUAUUCUGAGGCCAGCAAGACA----GGUCUCUUCAAU
(((...((((((....((((.-.((((....)))).--.))))((----.....)).))))))...))).((((((.........----))))))...... ( -23.80)
>DroSim_CAF1 89589 94 - 1
GAAAAAUAAUUUCGAAAUUGC-UCCCCUUGUGGGGG--ACAAUGC----GUUAAGCUAGGUUAGUAUUCUGAGGCCAGCAAGACAAGUAGGUCUCUUCAAU
(((...((((((....((((.-.((((....)))).--.))))((----.....)).))))))...))).((((((.((.......)).))))))...... ( -25.70)
>DroYak_CAF1 79633 97 - 1
GAAAAAUUAAUUCAAAAUUAUUUCCUCUUUUGGGGAAACCUCUAU----GUUAAUCGAGGUUAGUAUUAUGAGACCAACAAGCUAAGUACGUCUCUAAAAU
......................(((((....)))))((((((.((----....)).))))))........(((((..((.......))..)))))...... ( -18.70)
>consensus
GAAAAAUAAUUUCGAAAUUGC_UCCCCUUGUGGGGG__ACAAUGC____GUUAAGCUAGGUUAGUAUUAUGAGGCCAGCAAGACAAGUAGGUCUCUUCAAU
................((((..(((((....)))))...))))...........................((((((.((.......)).))))))...... (-15.44 = -16.25 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:04 2006