Locus 7528

Sequence ID 2L_DroMel_CAF1
Location 20,896,655 – 20,896,751
Length 96
Max. P 0.999803
window12100

overview

Window 0

Location 20,896,655 – 20,896,751
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 78.47
Mean single sequence MFE -28.70
Consensus MFE -18.08
Energy contribution -19.20
Covariance contribution 1.12
Combinations/Pair 1.14
Mean z-score -3.87
Structure conservation index 0.63
SVM decision value 4.12
SVM RNA-class probability 0.999803
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20896655 96 - 22407834
UUCAGCUGGCCUAACUAUUACGUGGCAUUAAACACAAAUAAUAGUAUAGAGAGCUUAAAACAUGUUUAGAGCUUUCUGUUAGUAGGUUAGCCACCA
....((((((((((((((((.(((........)))...)))))))(((((((((((.(((....))).)))))))))))...)))))))))..... ( -33.70)
>DroSec_CAF1 83781 95 - 1
UUCAGCUGGCUUAACUAUUACGUGGCACUAAACACAAACAAUAGUAUAGAGUGCUCAAAACACAUUGAGAGCUUUCUGUUAGUG-GCUAGCCUCCA
....(((((((..((((((..(((........)))....))))))((((((.((((............)))).))))))....)-))))))..... ( -24.70)
>DroSim_CAF1 83935 96 - 1
UUCAGCUGGCCUAACUAUUACGUGGCACUAAACAAAAAUAAUAGUAUAGAGUGCUCAAAACACGUUGAGAGCUUUCUGUUACUGGGCUAGCAUCCA
....((((((((((((((((..((........))....)))))))((((((.((((..((....))..)))).))))))...)))))))))..... ( -31.00)
>DroEre_CAF1 81493 78 - 1
UUCAGCUGGCCUA-----------------CACACAAAAAAUAGUAUAGAGUGAUUU-UGUACUUUGAGCGCUUUCUGUUAGUGGGCUAGCCUCCA
....(((((((((-----------------(..(((.(((...((.(((((((....-..))))))).))..))).)))..))))))))))..... ( -25.40)
>consensus
UUCAGCUGGCCUAACUAUUACGUGGCACUAAACACAAAUAAUAGUAUAGAGUGCUCAAAACACGUUGAGAGCUUUCUGUUAGUGGGCUAGCCUCCA
....(((((((((........(((........)))..........((((((.((((............)))).))))))...)))))))))..... (-18.08 = -19.20 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:01 2006