Locus 7525

Sequence ID 2L_DroMel_CAF1
Location 20,885,674 – 20,885,791
Length 117
Max. P 0.734726
window12095

overview

Window 5

Location 20,885,674 – 20,885,791
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.98
Mean single sequence MFE -27.12
Consensus MFE -13.68
Energy contribution -17.93
Covariance contribution 4.25
Combinations/Pair 1.10
Mean z-score -2.34
Structure conservation index 0.50
SVM decision value 0.43
SVM RNA-class probability 0.734726
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20885674 117 - 22407834
UGAUAUUCUCAAGUUGGGCAAUGUUGGGAUAUCAUUGUGAUAUUCCUUGUCAUUU-UUAUCACAUUCUAGUUUUAUACUCUUGCUUGAGGGUGUGUUUAUUUAGCUCACCCGUAAAAA--
........((((((..(((((....((((((((.....)))))))))))))....-............(((.....)))...))))))(((((.(((.....))).))))).......-- ( -29.10)
>DroSec_CAF1 69758 118 - 1
UGAAAUUCUAAAGUUUGGCAAUGUUGUGAUAUCAUUGUGAUAUUCCUUGUCAUUUUUUAUCACAUAUGAGUUUUAUACUCUUGCUUGAGGGUGUGAUUAUUUAGCUCACCCACACAAA--
............((.(((......(((((((.....((((((.....))))))....)))))))..((((((((((((((((....))))))))))......)))))).))).))...-- ( -29.90)
>DroSim_CAF1 73698 118 - 1
UGAAAUUCUAAAGUUUGGCAAUGUUGUGAUAUCAUUGUGAUAUUCCUUGUCAUUUUUUAUCACAUAUGAGUUUUAUACUCUUGCUUGAGGGUGUGAUUAUUUAGCUCACCCACACAAA--
............((.(((......(((((((.....((((((.....))))))....)))))))..((((((((((((((((....))))))))))......)))))).))).))...-- ( -29.90)
>DroYak_CAF1 62671 108 - 1
UGCUAUUUUAAAGUUUAGUAGUGUUGUGAUACUUUUGU-----UUUUUGUAAUUU-UCAUCAC---UGUGUGUUA---UCACGCUCGAAGGUUUGAUAAUUUAUGUCACAGUUACAUGGU
.(((((..(((((..(((.(((((....))))).))).-----.)))))......-.....((---((((.((((---(((.(((....))).)))))))......))))))...))))) ( -19.60)
>consensus
UGAAAUUCUAAAGUUUGGCAAUGUUGUGAUAUCAUUGUGAUAUUCCUUGUCAUUU_UUAUCACAUAUGAGUUUUAUACUCUUGCUUGAGGGUGUGAUUAUUUAGCUCACCCACACAAA__
.............(..(((((...(((((((.....((((((.....))))))....)))))))...((((.....)))))))))..)(((((.(((.....))).)))))......... (-13.68 = -17.93 +   4.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:57 2006