Locus 7522

Sequence ID 2L_DroMel_CAF1
Location 20,869,560 – 20,869,652
Length 92
Max. P 0.915835
window12089

overview

Window 9

Location 20,869,560 – 20,869,652
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 84.00
Mean single sequence MFE -19.79
Consensus MFE -17.86
Energy contribution -17.37
Covariance contribution -0.50
Combinations/Pair 1.22
Mean z-score -1.97
Structure conservation index 0.90
SVM decision value 1.10
SVM RNA-class probability 0.915835
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20869560 92 - 22407834
UACGACUGCCCCGAUAUUACCUACAGUCCAGUAUUGUAUCCCAUUACAUCGAUACUUUUGCAUUUCAUGUCGGGUGAGUUAU---CGCAGUGCCA
....(((((((((((((......(((...(((((((.............))))))).)))......)))))))).((....)---)))))).... ( -22.32)
>DroVir_CAF1 70211 91 - 1
UAUGAUUGUCCCGACAUUACCUACAGUCCAGUAUUGUAUCCGAUUACAUCGUUACUUUUGCAUUUCAUGUCGGGUAAGUGCU---ACAUUUUUU-
.....(((.((((((((......(((...((((.((((......))))....)))).)))......))))))))))).....---.........- ( -17.50)
>DroGri_CAF1 49067 92 - 1
UAUGAUUGCCCCGACAUUACCUACAGUCCAGUAUUGUAUCCAAUUGCAGCGUUACUUUUGCAUUUCAUGUCGGGUAAGUUGU---UGAACUUUUC
.(..(((..((((((((....((((((.....))))))......(((((........)))))....))))))))..)))..)---.......... ( -20.80)
>DroWil_CAF1 75431 92 - 1
UAUGAUUGCCCCGAUAUUACCUACAGUCCAGUAUUGUAUCCAAUUACAUCGAUACUUUUGCAUUUCAUGUCGGGUAAGUCAU---UCCAAUCACA
.((((((..((((((((......(((...(((((((.............))))))).)))......))))))))..))))))---.......... ( -21.42)
>DroMoj_CAF1 59039 94 - 1
UAUGAUUGUCCCGACAUUACCUACAGUCCAGUAUUGUAUCCAAUUACAUCGUUACUUUUGCAUUUCAUGUCGGGUAAGUGCCUAUCCACUAUCU-
.........((((((((......(((...((((.((((......))))....)))).)))......))))))))..((((......))))....- ( -19.20)
>DroAna_CAF1 49553 89 - 1
UACGACUGUCCCGAUAUUACCUAUAGUCCAGUAUUGUAUCCCAUUACAUCGAUACUUUUGCAUUUCAUGUCGGGUAAGUUAU---CGAU---UCU
...((((..((((((((............(((((((.............)))))))..........))))))))..))))..---....---... ( -17.47)
>consensus
UAUGAUUGCCCCGACAUUACCUACAGUCCAGUAUUGUAUCCAAUUACAUCGAUACUUUUGCAUUUCAUGUCGGGUAAGUUAU___CCAAUUUUC_
...((((..((((((((......(((...((((.((((......))))....)))).)))......))))))))..))))............... (-17.86 = -17.37 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:52 2006