Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,861,818 – 20,861,922 |
Length | 104 |
Max. P | 0.792530 |
Location | 20,861,818 – 20,861,922 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.18 |
Mean single sequence MFE | -21.88 |
Consensus MFE | -16.80 |
Energy contribution | -16.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.77 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20861818 104 + 22407834 UUUUCACCACGUUUUCACAUCAAACAACCUUAGA----------------ACAUUGUAAUUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA ...(((..((((((.......)))).........----------------....((((((..........)))))).))..)))....((((((((((....))))))))))........ ( -21.00) >DroSec_CAF1 42009 104 + 1 UUUUCACCACGUUUUCACACCAAACAACCUGAAC----------------ACAUUGCAACUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA ...(((..((((.((((............)))).----------------))..(((((............))))).))..)))....((((((((((....))))))))))........ ( -22.20) >DroSim_CAF1 53106 104 + 1 UUUUCACCAUGUUUUCACACCAAACAGCAUUAGC----------------ACAUUGCAACUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA ..(((...(((...(((.........((....))----------------....(((((............))))).....))).)))((((((((((....)))))))))).....))) ( -22.30) >DroEre_CAF1 52709 88 + 1 --------AAGUUUUCACAUCAAGAAACCU------------------------GGUAACUCACCUCAUUAUUGCACGUUUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACACGAA --------.....(((..(((((((.....------------------------.((((............))))...)))))))...((((((((((....)))))))))).....))) ( -20.90) >DroYak_CAF1 44045 116 + 1 UUUU----AAGUUUUCACAUAAAAAAACCUUAGUAUUUGGCAUUAAUAGCUCCUUGAAACUCACCUCAUUAUUGCACGUUUUAAUCAUGAGCAGCGUGGGCUCAUGCUGCUCCACCCGAA ..((----(((((((........)))).)))))..(((((........((....(((........))).....)).............((((((((((....))))))))))...))))) ( -23.00) >consensus UUUUCACCAAGUUUUCACAUCAAACAACCUUAGC________________ACAUUGCAACUUACCUCAUUAUUGCACGUCUUGAUCAUGAGCAGCGUGGGUUCAUGCUGCUCCACCCGAA ........................................................................................((((((((((....))))))))))........ (-16.80 = -16.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:49 2006