Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,153,622 – 2,153,742 |
Length | 120 |
Max. P | 0.781330 |
Location | 2,153,622 – 2,153,742 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -33.33 |
Consensus MFE | -20.48 |
Energy contribution | -20.93 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.33 |
Mean z-score | -1.69 |
Structure conservation index | 0.61 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2153622 120 - 22407834 AUCUCGUAACCGUCGUUCAACGUCACUAUGCGUUUUUGAGCGUCCACCUUCUUCACAGAGAAACCUUGAGCGACGGCAAUCCCUCCAUUUGCAUUAUCAUCCAGAUCCUCGGGGUCAAUG .........(((((((((((.((......(((((....))))).....(((((....))))))).)))))))))))..(((((...(((((.((....)).)))))....)))))..... ( -28.50) >DroVir_CAF1 7606 120 - 1 AUCUGAUAGCCGUCGUUCAAUGUUACAAUGCGUUUCUGUGCAUCAACUUUCUUAACGGCGAAACCUUGAGCGACGGCUAUGCCGCCGUUUACGCUGUCUUGAAGCUUCUCGGGAUCGACA .....(((((((((((((((.(((...(((((......)))))......((........))))).)))))))))))))))....(((.....(((.......)))....)))........ ( -35.20) >DroGri_CAF1 7370 120 - 1 AUCUGAUAGCCGUCGUUCAAUGUUGCAAUGCGAUUCUGUGCAUCGAUCUUCUUCACGGCAAAACCUUGAGCGACGGCUAUGCCACCAUUUACACUCUCGUCCAGCUUCUCUGGGUCCACA .....(((((((((((((((..((((.(((((......))))).((......))...))))....)))))))))))))))...................(((((.....)))))...... ( -37.00) >DroWil_CAF1 7910 120 - 1 AUUUGAUAGCCGUCGUUCAAUGUCACAACGCGAUUCUGUGCAUCCACUUUCUUUACGGCGAAACCUUGAGCAACGGCUAUGCCACCUUUUACGCUGUCCUCCAGCUUUUCAGGAUCCAUG .....((((((((.((((((.((..(..((..(....(((....))).....)..))..)..)).)))))).))))))))....(((.....((((.....)))).....)))....... ( -30.40) >DroAna_CAF1 10193 120 - 1 AUCUUAUAGCCAUCGUUUAGCGUCACAACGCGCUUUUGGGCGUCCACUUUCUUAACGGCGAAACCCUGGGCAACGGAUAUUCCACCAUUGGUGCUGUCCGCCAGGUUCUCUGGAUCUACG ((((...((((..((...(((((......)))))..))((((((((.((((........))))...)))))...(((((...((((...)))).)))))))).))))....))))..... ( -32.80) >DroPer_CAF1 8191 120 - 1 AUCUUAUAGCCGUCGUUCAAUGUCACAGUGUGAUUCUGGGCAUCCACCUUCUGCACUGAGAAUCCUUGUGCGACGGCUAUACCACCAUUUACACUCUCCUCAAGCUUUUCGGGAUCCACA ....((((((((((((.(((..((.((((((((...(((....)))...)).)))))).))....))).))))))))))))...............((((..........))))...... ( -36.10) >consensus AUCUGAUAGCCGUCGUUCAAUGUCACAAUGCGAUUCUGUGCAUCCACCUUCUUCACGGCGAAACCUUGAGCGACGGCUAUGCCACCAUUUACACUGUCCUCCAGCUUCUCGGGAUCCACA .....(((((((((((((((.((....((((........)))).....(((........))))).)))))))))))))))........................................ (-20.48 = -20.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006