Locus 7519

Sequence ID 2L_DroMel_CAF1
Location 20,861,683 – 20,861,783
Length 100
Max. P 0.601552
window12085

overview

Window 5

Location 20,861,683 – 20,861,783
Length 100
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 77.06
Mean single sequence MFE -27.95
Consensus MFE -22.95
Energy contribution -23.57
Covariance contribution 0.61
Combinations/Pair 1.27
Mean z-score -0.79
Structure conservation index 0.82
SVM decision value 0.14
SVM RNA-class probability 0.601552
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20861683 100 + 22407834
GCCCGUACCGAAGUAGGCCUGUCGCUGGCCCUUGUCAUCUUUUACAUUUCUUUCAAACCAGCGCGAAGAGCAGUAGGCACCAAAUACCUAAUAAAA---------------AGAA
................(((((.((((((...(((...................))).)))))((.....)).))))))..................---------------.... ( -16.31)
>DroVir_CAF1 57979 103 + 1
GCCGGUGCCAAAGUAGGCCUGCCUCUGGCCCUUGUCAUCCUUGACAUUGCGCUCAAACCAGCGCGACGAGCAAUAGGCGCCAAAUACCUGA-------GUGAAAAU-----AGAA
...((((((......((((.......))))..(((((....)))))(((((((......))))))).........))))))..........-------........-----.... ( -33.50)
>DroGri_CAF1 39248 102 + 1
GCCGGUGCCAAAAUAGGCCUGUCUCUGCCCUUUAUCAUCCUUGACAUUGCGCUCAAACCAGCGCGACGAGCAAUAGGCCCCAAAUACCUAA-------AUAACAA------AGAA
...((((........((((((((((.........(((....)))..(((((((......))))))).)))..))))))).....))))...-------.......------.... ( -24.92)
>DroWil_CAF1 61845 109 + 1
GCCUGUGCCAAAGUAGGCCUGUCGCUGGCCCUUGUCGUCCUUGACAUUGCGUUCAAACCAACGCGAUGAGCAGUAGGCACCAAAUACCUGUUG--A-UGAAUGAAGUGAUUA---
((((((((((.....((((.......))))..(((((....)))))(((((((......))))))))).))).)))))...............--.-...............--- ( -29.50)
>DroMoj_CAF1 45996 110 + 1
GCCGGUGCCAAAGUAGGCCUGUCUCUGGCCCUUGUCAUCUUUGACGUUGCGCUCGAACCAGCGCGAGGAGCAGUAGGCGCCAAAUACCUGAAAACAAAGUUUAAAU-----UGAU
...((((((......((((.......))))(((((((....)))).(((((((......))))))).))).....)))))).........................-----.... ( -33.50)
>DroAna_CAF1 41759 96 + 1
GCCGGUGCCAAAGUAGGCCUGUCGCUGGCCCUUGUCAUCUUUAACAUUUCGUUCGAACCAGCGGGAGGAGCAAUAGGCACCAAAUACCUUU----A---------------AAAA
...((((((........(((.(((((((....(((........))).(((....)))))))))).))).......))))))..........----.---------------.... ( -29.96)
>consensus
GCCGGUGCCAAAGUAGGCCUGUCGCUGGCCCUUGUCAUCCUUGACAUUGCGCUCAAACCAGCGCGACGAGCAAUAGGCACCAAAUACCUGA____A__GU___AA______AGAA
...((((((......((((.......))))..(((((....)))))(((((((......))))))).........)))))).................................. (-22.95 = -23.57 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:48 2006