Locus 7518

Sequence ID 2L_DroMel_CAF1
Location 20,853,591 – 20,853,690
Length 99
Max. P 0.933117
window12084

overview

Window 4

Location 20,853,591 – 20,853,690
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 88.19
Mean single sequence MFE -23.33
Consensus MFE -17.86
Energy contribution -17.20
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -3.41
Structure conservation index 0.77
SVM decision value 1.23
SVM RNA-class probability 0.933117
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20853591 99 + 22407834
AGGUAGACUGUACUGACUAUCUUACAUGUAUAAAAACAAUAUCUAUUGUAUAUAUGUACUUCCUCAUUUAUUAUACUAUAAUGAUAAAGUGCGUUUGCU
.(((((((.(((((........(((((((((....(((((....)))))))))))))).........(((((((......))))))))))))))))))) ( -22.40)
>DroSec_CAF1 33770 90 + 1
AGGUAGACUGUACUGACUAUCUUCCAUGUAUAUAAACAAUAU-------AUGCAUGCAC--CCUGAUUCAUUAUACUAUAAUGAUAAAGUGCGUUUGCU
.(((((((.(((((..........((((((((((.....)))-------)))))))...--......(((((((...)))))))...)))))))))))) ( -23.80)
>DroSim_CAF1 44464 90 + 1
AGGUAGACUGUACUGACUAUCUUCCAUGUAUAUAAACAAUAU-------AUGCAUGCAC--CCUGAUUCAUUAUAUUAUAAUGAUAAAGUGCGUUUGCU
.(((((((.(((((..........((((((((((.....)))-------)))))))...--......(((((((...)))))))...)))))))))))) ( -23.80)
>consensus
AGGUAGACUGUACUGACUAUCUUCCAUGUAUAUAAACAAUAU_______AUGCAUGCAC__CCUGAUUCAUUAUACUAUAAUGAUAAAGUGCGUUUGCU
.(((((((.(((((..........(((((((..................)))))))...........(((((((...)))))))...)))))))))))) (-17.86 = -17.20 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:47 2006