Locus 7517

Sequence ID 2L_DroMel_CAF1
Location 20,851,101 – 20,851,217
Length 116
Max. P 0.978206
window12082 window12083

overview

Window 2

Location 20,851,101 – 20,851,217
Length 116
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -45.87
Consensus MFE -40.22
Energy contribution -40.67
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.93
Structure conservation index 0.88
SVM decision value 0.15
SVM RNA-class probability 0.605506
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20851101 116 + 22407834
UCUUGUCUGGAAUAAGAU----ACGGAUCUCGGCCAGGGCGUAGGCUAUGCGGGCAUAGCACUCCGCCGGGGUGGCCACCGUGCCGACCUCCAGAAAGAGAUUCUUCUGAAAAUGGGCAU
...((((((.....(((.----..(((((((......((((.((((((((....)))))).)).))))((((((((......))).))).)).....))))))).))).....)))))). ( -45.20)
>DroSec_CAF1 29624 120 + 1
UCUUGUCUGGAAUAAGAUACUUACGGAUCUCGGCCAGGGCGUAGGCUAUGCGGACAUAGCACUCCGCCGGGUUGGCCACCGUGCUGACCUCCAGAAAGAGAUUCUUCUGAAGAUGGGCAU
.((..(((((((((((...)))).(((((((((((((((((.((((((((....)))))).)).))))...))))))......(((.....)))...)))))))))))..)))..))... ( -42.80)
>DroSim_CAF1 30778 120 + 1
UCUUGUCUGGAAUAAGAUACUUACGGAUCUCGGCCAGGGCGGAGGCUAUGCGGACAUAGCACUCCGCCGGGUUGGCCACCGUGCUGACCUCCAGAAAGAGAUUCUUCUGAAGAUGGGCAU
.((..(((((((((((...)))).((((((((((((((((((((((((((....)))))).)))))))...))))))......(((.....)))...)))))))))))..)))..))... ( -49.60)
>consensus
UCUUGUCUGGAAUAAGAUACUUACGGAUCUCGGCCAGGGCGUAGGCUAUGCGGACAUAGCACUCCGCCGGGUUGGCCACCGUGCUGACCUCCAGAAAGAGAUUCUUCUGAAGAUGGGCAU
((((((.....)))))).....((((.....((((((((((.((((((((....)))))).)).))))...)))))).))))(((.(.((.(((((........))))).)).).))).. (-40.22 = -40.67 +   0.45)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 3

Location 20,851,101 – 20,851,217
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -49.07
Consensus MFE -44.69
Energy contribution -44.80
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -3.74
Structure conservation index 0.91
SVM decision value 1.81
SVM RNA-class probability 0.978206
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20851101 116 - 22407834
AUGCCCAUUUUCAGAAGAAUCUCUUUCUGGAGGUCGGCACGGUGGCCACCCCGGCGGAGUGCUAUGCCCGCAUAGCCUACGCCCUGGCCGAGAUCCGU----AUCUUAUUCCAGACAAGA
..(((.(((((((((((......))))))))))).)))((((((((((....((((.((.((((((....)))))))).)))).))))))....))))----.................. ( -46.00)
>DroSec_CAF1 29624 120 - 1
AUGCCCAUCUUCAGAAGAAUCUCUUUCUGGAGGUCAGCACGGUGGCCAACCCGGCGGAGUGCUAUGUCCGCAUAGCCUACGCCCUGGCCGAGAUCCGUAAGUAUCUUAUUCCAGACAAGA
.(((..(((((((((((......)))))))))))..))).((.(((((....((((.((.((((((....)))))))).)))).)))))(((((.(....).)))))...))........ ( -47.20)
>DroSim_CAF1 30778 120 - 1
AUGCCCAUCUUCAGAAGAAUCUCUUUCUGGAGGUCAGCACGGUGGCCAACCCGGCGGAGUGCUAUGUCCGCAUAGCCUCCGCCCUGGCCGAGAUCCGUAAGUAUCUUAUUCCAGACAAGA
.(((..(((((((((((......)))))))))))..))).((.(((((....(((((((.((((((....))))))))))))).)))))(((((.(....).)))))...))........ ( -54.00)
>consensus
AUGCCCAUCUUCAGAAGAAUCUCUUUCUGGAGGUCAGCACGGUGGCCAACCCGGCGGAGUGCUAUGUCCGCAUAGCCUACGCCCUGGCCGAGAUCCGUAAGUAUCUUAUUCCAGACAAGA
.(((..(((((((((((......)))))))))))..))).((.(((((....((((.((.((((((....)))))))).)))).)))))(((((.(....).)))))...))........ (-44.69 = -44.80 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:46 2006