Locus 7515

Sequence ID 2L_DroMel_CAF1
Location 20,847,544 – 20,847,647
Length 103
Max. P 0.538498
window12079

overview

Window 9

Location 20,847,544 – 20,847,647
Length 103
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 85.76
Mean single sequence MFE -22.25
Consensus MFE -13.55
Energy contribution -14.18
Covariance contribution 0.62
Combinations/Pair 1.19
Mean z-score -1.97
Structure conservation index 0.61
SVM decision value 0.01
SVM RNA-class probability 0.538498
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20847544 103 - 22407834
UUGUAUUGCUUAAUUGCGCUAUUUCUAGCUUAAUAAUGGAGGAAUCAUAGAGUUUUCUUCUCAGUUUUGCUGAUUUAUGAAAUCUUAAGAUUGUGUUUUCUUC
.......((......))((((....))))........(((((((.(((((((.((((...((((.....)))).....)))).))).....)))).))))))) ( -18.30)
>DroSec_CAF1 25591 103 - 1
UUGUAUUGCUUAAUUGCGCUAUUUCCAGCUUAAUAAUGGAGGAAUCAUAGAGUUUUAUUCUCAGUUUUGCUGACUUAUGAAGUCUUAAGAUUCUGCUAUUUUC
.......((......))(((......))).....(((((.((((((.(((..((((((..((((.....))))...))))))..))).)))))).)))))... ( -22.00)
>DroSim_CAF1 26511 103 - 1
UUGUAGUGCUUAAUUGCGCUAUUUCCAGCUUAAUAAUGGAGGAAUCAUAGAGUUUUAUUCUCAGUUUUGCUGACUUAUGAAAUUUUAAGAUUCUGUUAUUUUC
..(((((((......))))))).((((.........))))((((((.(((((((((((..((((.....))))...))))))))))).))))))......... ( -30.40)
>DroYak_CAF1 31939 102 - 1
UUGUAUCGCUUAAUGGCGCUAUUUUUAGCUAGAUAAUG-AAGAACAGUGGACUUUCAGUCUCAGUAUUGCUGACAUAAAAAAUCUUAAAAUUCUGUUAUUUUC
...(((((((....)))((((....))))..))))...-...(((((..(((.....)))((((.....))))...................)))))...... ( -18.30)
>consensus
UUGUAUUGCUUAAUUGCGCUAUUUCCAGCUUAAUAAUGGAGGAAUCAUAGAGUUUUAUUCUCAGUUUUGCUGACUUAUGAAAUCUUAAGAUUCUGUUAUUUUC
.......((......))(((......))).....(((((.((((((..(((.(((.....((((.....)))).....))).)))...)))))).)))))... (-13.55 = -14.18 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:43 2006