Locus 7513

Sequence ID 2L_DroMel_CAF1
Location 20,842,319 – 20,842,413
Length 94
Max. P 0.991524
window12076

overview

Window 6

Location 20,842,319 – 20,842,413
Length 94
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 64.41
Mean single sequence MFE -23.29
Consensus MFE -10.40
Energy contribution -10.32
Covariance contribution -0.08
Combinations/Pair 1.35
Mean z-score -2.50
Structure conservation index 0.45
SVM decision value 2.27
SVM RNA-class probability 0.991524
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20842319 94 + 22407834
-----------AUUAUGAG--CCUUGAUAACAGAAUAGAAAGCCUAAGAACUUUUUCUGUGUGUAGCUGUGGGAAACAAUCAAUUACCCACACUACACCAACUUAGA
-----------....((((--..(((...(((((...(((((........))))))))))((((((.((((((.............))))))))))))))))))).. ( -23.72)
>DroSec_CAF1 20378 87 + 1
-----------AUUAUGAAAGCAUAG--------AGAGAAGGCCUAAGUACUUUUUCCAUGUGUAGCUGUGGGAAACAAUCAAUUACUCACACUACAC-AACUUAGA
-----------.(((((....)))))--------.(((((((........)))))))..(((((((.((((((.............))))))))))))-)....... ( -21.12)
>DroSim_CAF1 21243 87 + 1
-----------AUUAUGAAAACCUAG--------AGAGAAGGCCUAAGUACCUUUUCCAUGUGUAGCUGUGGGAAACAAUCAAUUACUCACACUACAC-AACUUAGA
-----------...........((((--------.(((((((........)))))))..(((((((.((((((.............))))))))))))-)..)))). ( -23.62)
>DroEre_CAF1 19452 100 + 1
UAGCUUGCUUGGUAGCGAC--U--CAGCUGCAGAAUUGAAAGUCCUGGCAUUUUUUCCGAGCGUCGCUGCGGGAAACAACGAAUUACUCACACU--AC-AACUGGCA
..(((.(.(((((((((((--.--..(((.(.(((..(((.((....)).))).))).)))))))))))).(....).................--.)-))).))). ( -24.90)
>DroYak_CAF1 25816 102 + 1
UAAAUUACUUAAUUACCAC--ACCUAAGUGGAGAAUUGAAAAACUU--CAUUUUUUCUGUGUGUAGCUGUGGGAAACAACCUUGUACUCACACUAUAC-AACUUUUA
...............((((--......))))((((.((((....))--))....)))).(((((((.((((((..(((....))).))))))))))))-)....... ( -23.10)
>consensus
___________AUUAUGAA__CCUAG_____AGAAUAGAAAGCCUAAGCACUUUUUCCGUGUGUAGCUGUGGGAAACAAUCAAUUACUCACACUACAC_AACUUAGA
.....................................(((((........))))).....((((((.((((((.............))))))))))))......... (-10.40 = -10.32 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:40 2006