Locus 7510

Sequence ID 2L_DroMel_CAF1
Location 20,821,286 – 20,821,379
Length 93
Max. P 0.642307
window12071

overview

Window 1

Location 20,821,286 – 20,821,379
Length 93
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -30.03
Consensus MFE -21.61
Energy contribution -21.00
Covariance contribution -0.61
Combinations/Pair 1.31
Mean z-score -1.28
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.642307
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20821286 93 - 22407834
-------------------AUAGAUGAGAUCUACAAGAUCGGCACCCAACUCACCGCCAUUAUGUGGGCCAGCGAAACAAAUAUUCUGGUGGGAGUACACGACUCGUGCUAC
-------------------........((((.....))))(((((........((((((..((((..(.........)..))))..))))))((((.....))))))))).. ( -25.10)
>DroPse_CAF1 742 93 - 1
-------------------CAGGAUGAGAUCUACAAGAUCGGAACCCAGCUAACGGCCAUCAAGUGGGCCAGCGAAACGAAUAUCCUGGUGGGAGUUCAUGACUCUUGCUAC
-------------------(((((((.((((.....))))........(((...((((........)))))))........)))))))(..((((((...))))))..)... ( -31.70)
>DroGri_CAF1 744 112 - 1
AGAUCGUUUGGCCAAUGGCGGGGAUGAAAUCUAUAAGAUUGGCACCCAGCUAACGUCCAUCAAGUGGGCCAGCGAGACAAACAUUUUGGUGGGUGUGCACGACUCCUGCUAC
...(((((.((((..((((.(((.((.((((.....))))..))))).)))).....(((...))))))))))))...........(((..((.((.....)).))..))). ( -34.50)
>DroEre_CAF1 1024 93 - 1
-------------------ACGGAUGAGAUUUACAAGAUCGGCACCCAACUCACUGCGAUUAUGUGGGCCAGCGAAACAAAUAUUCUGGUAGGAGUGCACGACUCCUGCUAC
-------------------..(((((.((((.....))))(((.((((..((.....))...)).)))))...........)))))((((((((((.....)))))))))). ( -25.70)
>DroAna_CAF1 708 93 - 1
-------------------UCGGACGAGAUCUACAAGAUCGGCACCCAGCUAACGGCCAUGAUGUGGGCCAGUGAGACGAAUAUCCUGGUGGGGGUGCAUGACUCCUGCUAC
-------------------..(((...((((.....)))).((((((.........((((...))))(((((.((........)))))))..)))))).....)))...... ( -29.80)
>DroPer_CAF1 742 93 - 1
-------------------CAGGAUGAGAUCUACAAGAUCGGAACCCAGCUAACGGCCAUCAAGUGGGCCAGCGAAACGAAUAUCCUGGUGGGAGUGCAUGACUCCUGCUAC
-------------------(((((((.((((.....))))........(((...((((........)))))))........)))))))(..(((((.....)))))..)... ( -33.40)
>consensus
___________________AAGGAUGAGAUCUACAAGAUCGGCACCCAGCUAACGGCCAUCAAGUGGGCCAGCGAAACAAAUAUCCUGGUGGGAGUGCACGACUCCUGCUAC
.....................(((((.((((.....))))((..((((.(.............)))))))...........)))))((((((((((.....)))))))))). (-21.61 = -21.00 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:36 2006