| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 20,819,715 – 20,819,835 |
| Length | 120 |
| Max. P | 0.667297 |
| Location | 20,819,715 – 20,819,835 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.06 |
| Mean single sequence MFE | -34.56 |
| Consensus MFE | -24.25 |
| Energy contribution | -23.70 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20819715 120 - 22407834 UAAAGACGGUGGCAUUAAACAAUCCCAAUGUCUCCUUGGUCAAUGGGGAUGCAAUGAUGAGGAAAUCACUUUCCGCCAGAAGCGUUUCGAAAUCCACCUUCUUGGCAUUGAACCGCUCCU ....((((((..(((((..((.(((((.((.((....)).)).))))).))...))))).(((((....)))))((((((((.((..........)))))).)))).....)))).)).. ( -31.10) >DroSec_CAF1 16029 120 - 1 UAAAGACGGUGGCAUUAAACAAUCCCAAUGUAUCCUUGGUCAAUGGGGAUGCAAUGAUGAGGAAAUCACUUUCCGCCAGGAGCGUUUCAAAGUCCACCUUCUUGGCAUUGAACUGCUCCU .........((((............((.((((((((((.....)))))))))).))....(((((....)))))))))((((((.(((((.(.(((......)))).))))).)))))). ( -39.90) >DroEre_CAF1 6595 120 - 1 UAAAGGCGGUGGCAUUAAACAAUCCCAAUGUAUCCUUGGUCAAUGGGGAUGCAAUGAUGAUGAAAUCACUUUGCGCCAGGAGCGUAUCGAAGUCCACCUUCGUGGCAUUGAACUGCUCCU ....((((.(((.(((....))).))).((((((((((.....)))))))))).((((......)))).....))))(((((((..((((.(.((((....))))).))))..))))))) ( -39.40) >DroWil_CAF1 52582 120 - 1 UAAAGGCUUUGGCAUUAAAAAUGCCCUGUGUUUCGGGAGUCAAGGGAGCAGCAAUGAUAAUGAAAUCACUUUCGGCCAACAAAACAUCAAAAUCAACCUUUGUGGCAUUCAAUUUCUCUU ....(((((.(((((.....)))))(((.....))))))))(((((((......((((......))))......((((.((((...............)))))))).......))))))) ( -23.46) >DroYak_CAF1 7427 120 - 1 UAAAGGCGGUGGCAUUAAACAAUCCCAAUGUGUCCUUGGUCAAUGGGGAUGCAAUGAUGAGGAAGUCACUUUCCGCCAGGAGCGUGUCGAAAUCCACCUUCUUGGCAUUGAACUGCUCCU ....((((((..(((((....(((((....((.(....).))...)))))....))))).(((((....)))))((((((((.(((........))).)))))))).....))))))... ( -38.70) >DroAna_CAF1 18227 120 - 1 UAAAGGCUGUGGCAUUAAAGAGUCCUUCAGUUUCUGGAGUCAGGGGAGAGGCUAUAACCACAAAGUCACUUUCCGCCAGGAGAGUAUUAAAGUCCACUUUCGUGGCAUUGAAUUUCUUCU .........((((......((.(((..........))).)).((..((.((((..........)))).))..))))))((((((..((((.(.((((....))))).))))..)))))). ( -34.80) >consensus UAAAGGCGGUGGCAUUAAACAAUCCCAAUGUAUCCUUGGUCAAUGGGGAUGCAAUGAUGAGGAAAUCACUUUCCGCCAGGAGCGUAUCAAAAUCCACCUUCGUGGCAUUGAACUGCUCCU .........((((...............(((((((((.......))))))))).((((......))))......))))((((((..((((...(((......)))..))))..)))))). (-24.25 = -23.70 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:35 2006