Locus 7508

Sequence ID 2L_DroMel_CAF1
Location 20,811,989 – 20,812,085
Length 96
Max. P 0.888720
window12069

overview

Window 9

Location 20,811,989 – 20,812,085
Length 96
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.48
Mean single sequence MFE -29.15
Consensus MFE -17.28
Energy contribution -19.03
Covariance contribution 1.75
Combinations/Pair 1.20
Mean z-score -2.88
Structure conservation index 0.59
SVM decision value 0.95
SVM RNA-class probability 0.888720
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20811989 96 + 22407834
GAUAUGAGUUCUAUAUAAGGCUUAAGCUUUGGGGC-CAAUACUUCAGUCGUGCGGCAAACGCAAAGCUGAAAAGUAUUCUAG--UU-CUAUAGAUCUCAC
....((((.((((((((((((....))))))((((-.(((((((((((..((((.....))))..)))))..))))))...)--))-))))))).)))). ( -33.20)
>DroSec_CAF1 837 96 + 1
GAUUUGAGUUCUAUAUAAGGCUUAAGCUUUGGGGC-CAAUACCUCAGUCGUGCGGCAAACGCAAAGCUGAAAAGUAUUCUAG--UU-CUAUAGAUCUCAC
....((((.((((((((((((....))))))((((-.(((((.(((((..((((.....))))..)))))...)))))...)--))-))))))).)))). ( -31.40)
>DroSim_CAF1 926 96 + 1
GAUUUGAGUUCUAUAUAAGGCUUAAGCUUUGGGGC-CAAUACCUCAGUCGUGCGGCAAACGCAAAGCUGAAAAGUAUUCUAG--UU-CUAUAGAUCUCAC
....((((.((((((((((((....))))))((((-.(((((.(((((..((((.....))))..)))))...)))))...)--))-))))))).)))). ( -31.40)
>DroEre_CAF1 669 95 + 1
UA-UUGGCUUCUAUAUAAGGCCUAAGCUUUGGGGU-CUA-GUCUCAGUCGUGCGGCAAACGCAAAACUGAAAAGUAUUCUAGUAUU-CUAUAGAGAA-AC
..-.....(((((((..((((((........))))-)).-...(((((..((((.....))))..)))))................-.)))))))..-.. ( -24.60)
>DroYak_CAF1 1607 94 + 1
UGGUUGGGUUCUAUAAAAGGCUUAAGCUUUGGGUU-CCC-AUCUCAGUCGUGCGGCAAACGCAAAGCUGAAAAGUAUUGUAG--UU-CUAUAGAUCU-AC
....((((..((....(((((....))))).))..-)))-)..(((((..((((.....))))..)))))........((((--.(-(....)).))-)) ( -28.40)
>DroAna_CAF1 12478 95 + 1
GAUUGGGACUCUAUAUAAAGGUUUAGCUUCUGGCCACGAUCAUUCAGUCGUGCGGCAAGCUCAGAGCAGUAUAGUAUUCUAA--UUUCUA---AUUUUAC
((((((((..((((((....((((((((((((..((((((......))))))))).)))))..)))).))))))..))))))--))....---....... ( -25.90)
>consensus
GAUUUGAGUUCUAUAUAAGGCUUAAGCUUUGGGGC_CAAUACCUCAGUCGUGCGGCAAACGCAAAGCUGAAAAGUAUUCUAG__UU_CUAUAGAUCUCAC
....((((.((((((((((((....))))))............(((((..((((.....))))..)))))..................)))))).)))). (-17.28 = -19.03 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:34 2006